[Mristudio-users] automate DTIstudio processing

[susumu mori]

Are you using ROIs for image quantification or fiber tracking?
>From the second question, I guess you want to do a comprehensive fiber
tracking with a lot of ROIs.
If that is the case, Yajing is the right person to ask.
We do have command line-version of the tracking.

Also, please take a look at RoiEditor at www.mristudio.org. It manages
multiple ROIs much better.
You can find some tips in the FAQ section.


On Tue, Aug 6, 2013 at 5:01 AM, Youngmin Huh <ymin1123 at gmail.com> wrote:

> Hi, I'm a new user.
> I have been struggling with DTIstudio for few weeks.
> I have some questions to ask.
>
> 1) how can I define multiple ROIs?
> I drew two ROIs with "ROI drawing" on "ROi" tab, and saved them into
> "binary maps".
> But It generated 3 dat files, but no map file (ROIMap_00.dat,
> ROIMap_01.dat, ROIMap_map.dat).
> I tried again with ROI editor, but It didn't work either. It generated
> only dat files.
> How can I generate .map file to load ROIs?
>
> 2) Is there any way to automate DTI processing?
> I'm going to use 116 ROI masks to obtain whole brain connectivity.
> It seems like hard work to do all this process manually.
>
> Any comment would be appreciate.
>
> Thanks,
>
> YM Huh
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