[Mristudio-users] automate DTIstudio processing

[Youngmin Huh]

Thanks for your comment!
I'm using ROIs for fiber tracking.

I used ROIeditor to generate binay map files, and changed
ROIMap_map.dat to ROIMap_map.map.
It worked! I can load multiple RoIs at ROIEditor, but I can't figure
out how I could load it on DTI studio.
I tried to load map file using the "load" icon in "Fiber" tab,
"ROI-Operation" section, but nothing happened.
Of course I finished whole brain fiber tracking before I load ROIs.
How could I find fibers connecting ROIs with my map file on DTI studio?

Thanks,

YM Huh

2013/8/7 susumu mori <smoriw at gmail.com>:
> Are you using ROIs for image quantification or fiber tracking?
> From the second question, I guess you want to do a comprehensive fiber
> tracking with a lot of ROIs.
> If that is the case, Yajing is the right person to ask.
> We do have command line-version of the tracking.
>
> Also, please take a look at RoiEditor at www.mristudio.org. It manages
> multiple ROIs much better.
> You can find some tips in the FAQ section.
>
>
> On Tue, Aug 6, 2013 at 5:01 AM, Youngmin Huh <ymin1123 at gmail.com> wrote:
>>
>> Hi, I'm a new user.
>> I have been struggling with DTIstudio for few weeks.
>> I have some questions to ask.
>>
>> 1) how can I define multiple ROIs?
>> I drew two ROIs with "ROI drawing" on "ROi" tab, and saved them into
>> "binary maps".
>> But It generated 3 dat files, but no map file (ROIMap_00.dat,
>> ROIMap_01.dat, ROIMap_map.dat).
>> I tried again with ROI editor, but It didn't work either. It generated
>> only dat files.
>> How can I generate .map file to load ROIs?
>>
>> 2) Is there any way to automate DTI processing?
>> I'm going to use 116 ROI masks to obtain whole brain connectivity.
>> It seems like hard work to do all this process manually.
>>
>> Any comment would be appreciate.
>>
>> Thanks,
>>
>> YM Huh
>> _______________________________________________
>> mristudio-users mailing list
>> mristudio-users at mristudio.org
>> http://lists.mristudio.org/mailman/listinfo/
>> Unsubscribe, send a blank email to:
>> mristudio-users-unsubscribe at mristudio.org
>
>
>
> _______________________________________________
> mristudio-users mailing list
> mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/
> Unsubscribe, send a blank email to:
> mristudio-users-unsubscribe at mristudio.org
>