<div dir="ltr">Are you using ROIs for image quantification or fiber tracking?<div>From the second question, I guess you want to do a comprehensive fiber tracking with a lot of ROIs.</div><div>If that is the case, Yajing is the right person to ask. </div>
<div>We do have command line-version of the tracking.</div><div><br></div><div>Also, please take a look at RoiEditor at <a href="http://www.mristudio.org">www.mristudio.org</a>. It manages multiple ROIs much better.</div>
<div>You can find some tips in the FAQ section.</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Aug 6, 2013 at 5:01 AM, Youngmin Huh <span dir="ltr"><<a href="mailto:ymin1123@gmail.com" target="_blank">ymin1123@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi, I'm a new user.<br>
I have been struggling with DTIstudio for few weeks.<br>
I have some questions to ask.<br>
<br>
1) how can I define multiple ROIs?<br>
I drew two ROIs with "ROI drawing" on "ROi" tab, and saved them into<br>
"binary maps".<br>
But It generated 3 dat files, but no map file (ROIMap_00.dat,<br>
ROIMap_01.dat, ROIMap_map.dat).<br>
I tried again with ROI editor, but It didn't work either. It generated<br>
only dat files.<br>
How can I generate .map file to load ROIs?<br>
<br>
2) Is there any way to automate DTI processing?<br>
I'm going to use 116 ROI masks to obtain whole brain connectivity.<br>
It seems like hard work to do all this process manually.<br>
<br>
Any comment would be appreciate.<br>
<br>
Thanks,<br>
<br>
YM Huh<br>
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</blockquote></div><br></div>