[Mristudio-users] Skull stripping

[Shaimaa Abdelsattar]

Thank you very much, i have an inquiry,  should this step be done before normalization to brain atlas, or normalization can be done correctly without this step(skull stripping)?

Thanks again 
Shaimaa


On May 25, 2014, at 9:39 PM, "Dorian P." <alb.net at gmail.com> wrote:

> Hi Shaimaa,
> 
> If you did not get help on this, I think skull stripping helps. Those are voxels that we don't really need to have a part in the calculation (and they are not just part of the skull but inferior soft tissues as well).
> 
> I used to do skull stripping by coregistering the T1 on FA, running segmentation of T1, and creating a mask of CSF and white matter. Then just multiply the mask with the FA. This can even be done automatically with a batch.
> 
> Dorian
> TJU
> 
> 
> 2014-05-22 9:50 GMT-04:00 Shaimaa Abdelsattar <shaimaa96 at hotmail.com>:
>> Hello experts,
>> Is skull stripping a must do step before doing normalization?, if so, what is its importance and how can it be done?
>> 
>> Thanks
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