[Mristudio-users] Ask for help

[Susumu Mori]

Hi Amira,

I'm not quite sure what you are trying to do. If you superimpose the ICBM
atlas on your patient data, various structures are defined in the patient.
Then do you want to use this information for tractography? In this case,
you will use the defined brain structures (for example, the white matter
beneath the motor cortex and the pons) to perform tractrograph (for
example, the corticospinal tract).

In this operation, the defined structures by the ICBM atlas are used for
seed ROIs for tractography and the actual process depends on the
tractography tool you are using. Unfortunately, we don't have experience
with DIPY or EUDX.

Susumu


On Fri, Aug 30, 2013 at 5:30 AM, Amira Chekir <chekir.amira at gmail.com>wrote:

> Hello;
> My name is CHEKIR AMIRA, I'am Phd student from Algeria , I work in
> clustering of white matter tract.
>
>  I work with ICBM-152 DTI 81 template and I want to compute WM fiber map
> for this Atlas,each representing particular bundle of fiber (corpus
> callosum, cortoco-spinal......)
> First, I used affine transformation to warp the atlas to individual data,
> to globally adjust the brain position, rotation, and the size
> I also used a method of DIPY (EUDX) for tractography
> What should I do ?
> Thanks in advance
> Bes regards
> AMIRA
>
> _______________________________________________
> mristudio-users mailing list
> mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/
> Unsubscribe, send a blank email to:
> mristudio-users-unsubscribe at mristudio.org
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.mristudio.org/pipermail/mristudio-users/attachments/20130830/d8c57469/attachment.html