[Mristudio-users] Extracting tract info between AAL ROIs

[susumu mori]

On Tue, Apr 30, 2013 at 12:43 PM, Venkatesh Rajagopalan <
VRajagopalan at kesslerfoundation.org> wrote:

>  Dear Users,****
>
> ** **
>
> I would like to extract information for DTI images such as number of
> tracts, fiber density, FA, MD values of tracts running between the ROIs (90
> ROIs) using AAL ROIs atlas. Could someone tell me how I can do this?
>

I hope FAQ#15 (https://www.mristudio.org/wiki/faq) answers the question.

> ****
>
> ** **
>
> Also do you have batch processing facility available to process DTI
> images?
>
We are working on it.


> Also can you make DTI studio accept text files for bvec (gradient table).
> I do some of the pre processing steps in a different software and use DTI
> studio for tract reconstruction so if DTI studio could accept a text file
> for gradient table field it will be great (now I have to type everytime 0:
> 0,0,0 1: -0.45,…. etc).
>

We usually cut&paste the file.
You can also use our text-based data entry called dpf file.

> In addition to saving the eigen values and other maps can you also include
> (automatic or user to check option to save all maps right now I believe CP,
> CL RD doesn’t get saved and one has to manually save them)
>

Hangyi can work on it.
We are working on fully automated pipeline now. Should be released this
year.

> ****
>
> ** **
>
> Thanks very much****
>
> Venkat****
>
> ** **
>
> ****
>
> [image: Kessler Foundation Signature]
>  [image: Kessler Foundation Facebook Page]<http://www.facebook.com/?ref=home#!/pages/Kessler-Foundation/123330414345741?sk=info> [image:
> Kessler Foundation You Tube]<http://www.youtube.com/user/KesslerFoundation> [image:
> Kessler Foundation Research Twitter Page]<http://www.twitter.com/KesslerFound>
>
> The information in this transmission is intended for official use of the
> Kessler Foundation. It is intended for the exclusive use of the persons or
> entities to which it is addressed. If you are not an intended recipient or
> the employee or agent responsible for delivering this transmission to an
> intended recipient, be aware that any disclosure, dissemination,
> distribution or copying of this communication, or the use of its contents,
> is strictly prohibited. If you received this transmission in error, please
> notify the sender by return e-mail and delete the material from any
> computer.   ­­
>
> _______________________________________________
> mristudio-users mailing list
> mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/
> Unsubscribe, send a blank email to:
> mristudio-users-unsubscribe at mristudio.org
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.mristudio.org/pipermail/mristudio-users/attachments/20130501/281d80a0/attachment.html