<div dir="ltr"><br><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Apr 30, 2013 at 12:43 PM, Venkatesh Rajagopalan <span dir="ltr"><<a href="mailto:VRajagopalan@kesslerfoundation.org" target="_blank">VRajagopalan@kesslerfoundation.org</a>></span> wrote:<br>
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<p class="">Dear Users,<u></u><u></u></p>
<p class=""><u></u> <u></u></p>
<p class="">I would like to extract information for DTI images such as number of tracts, fiber density, FA, MD values of tracts running between the ROIs (90 ROIs) using AAL ROIs atlas. Could someone tell me how I can do this?</p>
</div></div></blockquote><div><br></div><div style>I hope FAQ#15 (<a href="https://www.mristudio.org/wiki/faq">https://www.mristudio.org/wiki/faq</a>) answers the question. </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div lang="EN-US" link="blue" vlink="purple"><div><p class=""><u></u><u></u></p>
<p class=""><u></u> <u></u></p>
<p class="">Also do you have batch processing facility available to process DTI images? </p></div></div></blockquote><div style>We are working on it.</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div lang="EN-US" link="blue" vlink="purple"><div><p class="">Also can you make DTI studio accept text files for bvec (gradient table). I do some of the pre processing steps in a different software and use DTI studio for tract
reconstruction so if DTI studio could accept a text file for gradient table field it will be great (now I have to type everytime 0: 0,0,0 1: -0.45,…. etc). </p></div></div></blockquote><div><br></div><div style>We usually cut&paste the file.</div>
<div style>You can also use our text-based data entry called dpf file. </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div lang="EN-US" link="blue" vlink="purple"><div><p class="">In addition to saving the eigen values and other maps can you also include (automatic or user to check
option to save all maps right now I believe CP, CL RD doesn’t get saved and one has to manually save them)</p></div></div></blockquote><div><br></div><div style>Hangyi can work on it.</div><div style>We are working on fully automated pipeline now. Should be released this year. </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div lang="EN-US" link="blue" vlink="purple"><div><p class="">
<u></u><u></u></p>
<p class=""><u></u> <u></u></p>
<p class="">Thanks very much<u></u><u></u></p>
<p class="">Venkat<u></u><u></u></p>
<p class=""><u></u> <u></u></p>
<p class=""><u></u><u></u></p>
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