[Mristudio-users] CAWorks Amygdala Question

[Timothy Brown]

Hello Chris,

Your next step would be to select a subject that you will use as a 
template for your study.  Then

1) Hand segment this subject (create binary mask of amygdala)
2) Create surface mesh from this binary mask
3) Create amygdala landmarks for this subject

Once you have performed the above steps you can use the remote processing 
feature of CAWorks to generate amygdala in your population.

http://caportal/wiki/tutorials/lddmm_remote_panel/tutorial.html

-Timothy

Timothy Brown                 email: timothy at cis.jhu.edu
Computational Anatomist       phone: 410.516.7551
Center for Imaging Science    fax:   410.516.4557
Johns Hopkins University
301 Clark Hall
3400 N. Charles Street
Baltimore, MD 21218


On Wed, 18 Apr 2012, Christopher McCarthy wrote:

> Hello,
>
> I am trying to get volumes for the Amygdala using the semi automated
> landmarking process in CAworks.  I am having no trouble following the protocol
> for landmarking<http://caportal.cis.jhu.edu/wiki/tutorials/amygdala/amygdala.html>
> the
> structure, however after I save the landmarks I am not sure what to do
> next.  If anyone could point me towards the tutorial, or tell me the
> procedure they follow I would be very appreciative!  Feel free to contact
> me at the number listed below, or respond to the mailing list.
>
> Thanks in advance!
>
> Chris McCarthy
> Center for Psychiatric Neuroimaging
> SUNY Upstate Medical University
> 315-464-3269
>

Timothy Brown                 email: timothy at cis.jhu.edu
Computational Anatomist       phone: 410.516.7551
Center for Imaging Science    fax:   410.516.4557
Johns Hopkins University
301 Clark Hall
3400 N. Charles Street
Baltimore, MD 21218