[Mristudio-users] ex vivo DTI analysis

[susumu mori]

Hi Harish,

Please take a look at our DiffeoMap and RoiEditor.
The former has many functions for image registration and the latter can do
ROI operations including automated atlas-based segmentation.

Please refer to papers by Jiangyang Zhang/Manisha Aggarwal/Duan in
NeuroImage about the mouse atlas-based brain segmentation. Let us know if
you want to use our pre-segmented mouse atlases.

You can find tutorials and some manual materials in www.mristudio.org.

Susumu

On Tue, Jul 26, 2011 at 11:39 AM, Poptani, Harish <
Harish.Poptani at uphs.upenn.edu> wrote:

>  Hello Susumu,****
>
> ** **
>
> ** **
>
> Is there an easy way to co-register and analyze ex vivo DTI from the mouse
> brain? We have been acquiring high-resolution DTI data of the mouse brain
> and use DTI studio to process and analyze the data. Since these are
> phenotypically different mice, the differences in anatomy are not obvious
> and in order to assess DTI differences (FA for example), we need to make
> sure that all the brains are aligned and matched to each other. While there
> seems to be a way for performing the co-registration step within DTI studio,
> I have not been able to figure out a way to save the ROI such that it can be
> used for all the different samples. Can you/anyone else please guide us
> through this?****
>
> ** **
>
> Regards****
>
> ** **
>
> Harish****
>
>  ****
>
> The information contained in this e-mail message is intended only for the
> personal and confidential use of the recipient(s) named above. If the reader
> of this message is not the intended recipient or an agent responsible for
> delivering it to the intended recipient, you are hereby notified that you
> have received this document in error and that any review, dissemination,
> distribution, or copying of this message is strictly prohibited. If you have
> received this communication in error, please notify us immediately by
> e-mail, and delete the original message.
> _______________________________________________
> mristudio-users mailing list
> mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/
> Unsubscribe, send a blank email to:
> mristudio-users-unsubscribe at mristudio.org
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.mristudio.org/pipermail/mristudio-users/attachments/20110728/970370c7/attachment.html