[Mristudio-users] IFO, MdLF and EmC

[Yajing Zhang]

Hi, Andreas

You can find the fiber atlas in:
http://lbam.med.jhmi.edu/cmrm/Data_Yajing/fiberMenu.htm
The components of SLF can be downloaded in:
http://lbam.med.jhmi.edu/cmrm/Data_Yajing/longAssociation.htm
The corresponding paper is: "Atlas-guided tract reconstruction for automated
and comprehensive examination of the white matter anatomy." Neuroimage
52(4):1289-1301 (2010).


Best regards,
Yajing



On Fri, Jul 22, 2011 at 7:44 PM, susumu mori <susumu at mri.jhu.edu> wrote:

> Hi Andreas,
>
> With 2-2.5mm resolution, the external and extreme capsules are difficult to
> separate, but I agree that IFO seems to occupy a good portion of these
> structures.
>
> As for the different sections of the SLF, please refer to Yajing Zhang's
> paper in NeuroImage about the automated tractography. She created
> probabilistic maps of the different sections of the SLF in our atlas, which
> are available for download. Please contact Yajing about the location of the
> files. They may be already included in RoiEditor but I need to ask Xin.
>
> MdLF is currently not defined in our atlas.
>
> Susumu
>
> On Fri, Jul 22, 2011 at 10:58 AM, Andreas Horn <mail at andreas-horn.de>wrote:
>
>> Hello everybody, dear Susumu,
>>
>> I have read your response about IFO and SFO (
>> http://lists.mristudio.org/pipermail/mristudio-users/2011/001928.html).
>>
>> Now I still wonder what anatomical structures are most likely included (or
>> with which ones the cut-set is biggest) in IFO.
>> When I look at the tract, it seems that the extreme capsule is definitely
>> included, most likely also parts of external capsule, possibly uncinatus. Is
>> this correct?
>>
>> I would also be very glad about three-dimensional data of the MdLF as
>> delineated in Makris 2009 and/or the partialized SLF (I-III plus AF) but
>> can't seem to find them anywhere. Do you have any ideas how to get access to
>> these files?
>>
>> All I want to do is to assign our tracts to anatomical structures.
>>
>> Thank you so much for your help!
>>
>> Yours, sincerely, Andreas Horn
>>
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>
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