[Mristudio-users] Can't coregister Probabilistie Fibers Atlas to ICBM

[susumu mori]

Hi Andres,

I suspect that this is due to the coordinate conversion between the
Neurology (right is right) and Radiology (right and left) convention. Please
refer to FAQ15 in https://www.mristudio.org/wiki/faq.

As for the file format, I believe they are in Analyze but Yajing can help
you to read the data.

Susumu

On Fri, Nov 26, 2010 at 7:46 AM, Andreas Horn <mail at andreas-horn.de> wrote:

> Dear users,
>
> I am really new to mristudio (spm user so far) and can't register to the
> forum.
> I would be really thankful if anyone could help me out.
>
> My question is brief:
>
> I want to coregister the tracts I got from there:
> http://lbam.med.jhmi.edu/cmrm/Data_Yajing/fiberMenu.htm
>
> = Probabilistic Fibers Atlas
>
> with a standard template, e.g. the ICBM 2009c nonlin
> (
> http://www.bic.mni.mcgill.ca/~vfonov/icbm/2009/mni_icbm152_nlin_sym_09c_nifti.zip
> )
>
> I thought that the fibres should already be in that space as they are in
> the "eve" space and "eve" is in tge ICBM-152 space according to the
> Neuroimage Paper ("We used a single-subject white matter atlas in the
> ICBM-152 space, called the “Type II Eve Atlas”").
> But when I display e.g. the corticospinal tract above the ICBM 2009 image
> it looks displaced:
>
>
>
>
> Trying to coregister the two images with spm does not seem to work. Is
> there anything I can do?
>
> Thank you so much for your help.
>
>
> A second small question is what format the files on
> http://lbam.med.jhmi.edu/cmrm/human_whiteMatter/template_whiteMatter.php
> are in. They seem to be nifti as the extension is .img but there are no
> .hdr files available...
>
> Thank you!
>
> Yours, sincerely, Andreas Horn
> _______________________________________________
> mristudio-users mailing list
> mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/
> Unsubscribe, send a blank email to:
> mristudio-users-unsubscribe at mristudio.org
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.mristudio.org/pipermail/mristudio-users/attachments/20101202/dfe0937a/attachment-0001.html