Hi Andres,<div><br></div><div>I suspect that this is due to the coordinate conversion between the Neurology (right is right) and Radiology (right and left) convention. Please refer to FAQ15 in <a href="https://www.mristudio.org/wiki/faq">https://www.mristudio.org/wiki/faq</a>.</div>
<div><br></div><div>As for the file format, I believe they are in Analyze but Yajing can help you to read the data.</div><div><br></div><div>Susumu<br><br><div class="gmail_quote">On Fri, Nov 26, 2010 at 7:46 AM, Andreas Horn <span dir="ltr"><<a href="mailto:mail@andreas-horn.de">mail@andreas-horn.de</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div><div></div><div class="h5">Dear users,<br>
<br>
I am really new to mristudio (spm user so far) and can't register to the forum.<br>
I would be really thankful if anyone could help me out.<br>
<br>
My question is brief:<br>
<br>
I want to coregister the tracts I got from there:<br>
<a href="http://lbam.med.jhmi.edu/cmrm/Data_Yajing/fiberMenu.htm" target="_blank">http://lbam.med.jhmi.edu/cmrm/Data_Yajing/fiberMenu.htm</a><br>
<br>
= Probabilistic Fibers Atlas<br>
<br>
with a standard template, e.g. the ICBM 2009c nonlin<br>
(<a href="http://www.bic.mni.mcgill.ca/~vfonov/icbm/2009/mni_icbm152_nlin_sym_09c_nifti.zip" target="_blank">http://www.bic.mni.mcgill.ca/~vfonov/icbm/2009/mni_icbm152_nlin_sym_09c_nifti.zip</a>)<br>
<br>
I thought that the fibres should already be in that space as they are in the "eve" space and "eve" is in tge ICBM-152 space according to the Neuroimage Paper ("We used a single-subject white matter atlas in the ICBM-152 space, called the “Type II Eve Atlas”").<br>
But when I display e.g. the corticospinal tract above the ICBM 2009 image it looks displaced:<br>
<br>
</div></div><br><br>
<br>
Trying to coregister the two images with spm does not seem to work. Is there anything I can do?<br>
<br>
Thank you so much for your help.<br>
<br>
<br>
A second small question is what format the files on<br>
<a href="http://lbam.med.jhmi.edu/cmrm/human_whiteMatter/template_whiteMatter.php" target="_blank">http://lbam.med.jhmi.edu/cmrm/human_whiteMatter/template_whiteMatter.php</a><br>
are in. They seem to be nifti as the extension is .img but there are no .hdr files available...<br>
<br>
Thank you!<br>
<br>
Yours, sincerely, Andreas Horn<br>_______________________________________________<br>
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<br></blockquote></div><br></div>