[Mristudio-users] difference between JHU_MNI_SS_FA and JHU_MNI_SS_FA_ss

[Xin Li]

After you clicked the "OK" button of DiffeoMap, did you get this popped up message "The image data have been sent to the ftp server successfully."?


Xin

----- Original Message -----
From: "Risen, Sarah" <risen at kennedykrieger.org>
Date: Wednesday, July 21, 2010 10:09 am
Subject: Re: [Mristudio-users] difference between	JHU_MNI_SS_FA	and JHU_MNI_SS_FA_ss
To: "DTI Studio, ROI Editor,	DiffeoMap Questions/Support" <mristudio-users at mristudio.org>


> No, So I am guessing that it did not go through?  
>  
>  -----Original Message-----
>  From: mristudio-users-bounces at mristudio.org [ On Behalf Of Xin Li
>  Sent: Wednesday, July 21, 2010 10:07 AM
>  To: DTI Studio, ROI Editor, DiffeoMap Questions/Support
>  Subject: Re: [Mristudio-users] difference between JHU_MNI_SS_FA and JHU_MNI_SS_FA_ss
>  
>  Hello Sarah,
>  
>  After you sent the data, did you receive an email that told you the 
> lddmm job is processing?
>  
>  
>  Xin
>  
>  
>  
>  ----- Original Message -----
>  From: "Risen, Sarah" <risen at kennedykrieger.org>
>  Date: Wednesday, July 21, 2010 10:03 am
>  Subject: Re: [Mristudio-users] difference between	JHU_MNI_SS_FA	and JHU_MNI_SS_FA_ss
>  To: "DTI Studio, ROI Editor,	DiffeoMap Questions/Support" <mristudio-users at mristudio.org>
>  
>  
>  > Yesterday at 3 pm we did the initial multichannel LDDMM and typed 
> my 
>  > email.  In the tutorial, they said results are emailed in 30 min - 
> 5 
>  > hours.  Is this an accurate time frame?  Is there a contact if we 
> have 
>  > not received a reply email in >15 hours? Thank you. sarah
>  >  
>  >  From: mristudio-users-bounces at mristudio.org [ On Behalf Of susumu 
> mori
>  >  Sent: Wednesday, July 21, 2010 8:34 AM
>  >  To: DTI Studio, ROI Editor, DiffeoMap Questions/Support
>  >  Subject: Re: [Mristudio-users] difference between JHU_MNI_SS_FA 
> and JHU_MNI_SS_FA_ss
>  >  
>  >  "SS" means "single-subject", while "ss" means "skull stripped".
>  >  
>  >  Sorry for the confusing nomenclature.
>  >  If your data is skull stripped, you should use "ss" atlas.
>  >  Usually linear transformation works between non-skull stripped 
> data. 
>  > However, sometimes some extra signal such as sinus interferes with 
> the 
>  > registration. In this case, you may need to do registration between 
> 
>  > skull-stripped images.
>  >  For LDDMM, it is safe to use skull-stripped images.
>  >  On Tue, Jul 20, 2010 at 5:44 PM, Josselin <j.houenou at yahoo.fr<>> wrote:
>  >  Hi,
>  >  In many files provided, some have the letters "_ss" attached to 
> them. 
>  > What does it mean ? e.g. what's the difference between 
> JHU_MNI_SS_FA 
>  > and JHU_MNI_SS_FA_ss ?
>  >  thanks,
>  >  Josselin
>  >  
>  >  
>  >  
>  >  
>  >  
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