[Mristudio-users] fiber tracking

[susumu mori]

Hi youngbin,

The image dimension depends on your data and it's difficult to say what it
is. Our MNI space is 181x217x181, but I know that there are several versions
of MNI templates with different dimensions.

For the vector map, it unfortunately has to be raw format without header,
which is floating point with 3 vector components x D1 x D2 x D3. The
software you are using needs to have a way to save the vector file in this
raw format.

susumu

On Wed, May 19, 2010 at 3:15 PM, Youngbin Kwak <youngbin at umich.edu> wrote:

> Hello,
>
> We would like to perform fiber tracking using FA maps created from other
> programs. FA maps are currently in all in MNI normalized space in analyze
> format. I've chosen the fiber-tracking option from the file menu of
> DTIstudio and then a window that says Fiber-tracking options pops up. I
> chose the continuous tracking using principal ventor and FA map and it
> brings me to the window where you have to set image parameters. For FA-map,
> I chose the analyze .img file. for the principal vector, I wasn't sure what
> I should choose.. Also for image dimension and voxel size, I wasn't sure
> what what values to put..
> Can someone guide me here?
>
> Thanks!
> Youngbin
> --
> Youngbin Kwak M.S.
> Ph.D. candidate, Neuroscience Graduate Program
> Cognitive Science & Cognitive Neuroscience Program
> University of Michigan
>
> _______________________________________________
> Mristudio-users mailing list
> Mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/
> Unsubscribe, send a blank email to:
> Mristudio-users-unsubscribe at mristudio.org
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.mristudio.org/pipermail/mristudio-users/attachments/20100519/0ff693eb/attachment.html