[Mristudio-users] command file

[Jeff Sadino]

Hello Everyone,
I am interested in using the command/script based files to run a lot of
datasets.  I read Xin's posting about doing this in DiffeoMap with the
following commands.  Is there anywhere I can look to see all of the
available commands?  And are the instructions the same for DTI Studio as
they are for DiffeoMap?

Thank you!
Jeff Sadino


Govind,

You need to create a command txt file named as "xx.cf" first. The attached
is an example. It decribes the syntax of the commands. The Load Command File
option process all the loaded subject images based on these commands.

Hope this will help you.

Xin


//.cf file Format

// Lines that begin with "//" are comment lines.
// Commands are enclosed by "Begin/End" clauses.

// The commands use reserved keywords, such as "crop", "format",
"orientation".

// Crop Slices in Axial Projection Command Syntax
// crop startslicenumber endslicenumber

// Change Format Command Syntax
// format byte(word, float)

// Change Slice Orientation Command Syntax
// orientation axial(sagittal, coronal)

// Rotate Image Command Syntax
// rotate x degree y degree z degree trilinear(neighbor)

// Shift Image Command Syntax
// shift point(mm) x shift y shift z shift

// Resample Image Command Syntax
// resample imagewidth imageheight numberofslices fovwidth fovheight
slicethickness trilinear(neighbor)

// example

//    Begin
//        crop 20 180
//        format byte
//        orientation axial
//        rotate x 45 y 0 z 10 neighbor
//        shift point x 10 y 0 z 5
//        resample 181 217 181 181 217 1 trilinear
//    End
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