[Mristudio-users] Mristudio-users Digest, Vol 14, Issue 24
XIN LI
xli16 at jhmi.edu
Fri Mar 27 14:34:17 EDT 2009
Paul,
You're welcome! I am glad that you have solved the problem.
Xin
----- Original Message -----
From: Paul Beach <pabeach1 at gmail.com>
Date: Friday, March 27, 2009 1:30 pm
Subject: Re: [Mristudio-users] Mristudio-users Digest, Vol 14, Issue 24
To: mristudio-users at mristudio.org
> Xin,
>
> Yes, they are analyze files. But I've actually figured out (and
> fixed) what
> happened. Apparently a (-) was being inserted into the "field of view
> width" input. I simply clicked on "raw image" and removed the (-) and
> everything worked!
>
> Thanks so much for your suggestions!
>
> Paul
>
>
> On Fri, Mar 27, 2009 at 1:22 PM, <mristudio-users-request at mristudio.org>wrote:
>
> > Send Mristudio-users mailing list submissions to
> > mristudio-users at mristudio.org
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> >
> > or, via email, send a message with subject or body 'help' to
> > mristudio-users-request at mristudio.org
> >
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> > mristudio-users-owner at mristudio.org
> >
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of Mristudio-users digest..."
> >
> >
> > Today's Topics:
> >
> > 1. Re: About the registration of the rat brain (susumu)
> > 2. Re: Problem with Landmarker not loading subjects (XIN LI)
> > 3. loading AIR files (Copeland, Sarah A.)
> > 4. loading AIR files (Copeland, Sarah A.)
> > 5. loading AIR files (Copeland, Sarah A.)
> > 6. loading AIR files (Copeland, Sarah A.)
> > 7. loading AIR files (Copeland, Sarah A.)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Wed, 25 Mar 2009 17:19:51 -0400
> > From: susumu <susumu at mri.jhu.edu>
> > Subject: Re: [Mristudio-users] About the registration of the rat brain
> > To: "'DTI Studio, ROI Editor, Landmarker Questions/Support'"
> > <mristudio-users at mristudio.org>
> > Message-ID: <7k7ed7$6rnn4i at ipex3.johnshopkins.edu>
> > Content-Type: text/plain; charset="gb2312"
> >
> > Currently we are not providing rat atlases. We have mouse atlases,
> though.
> >
> >
> >
> > _____
> >
> > From: mristudio-users-bounces at mristudio.org
> > [ On Behalf Of zhongsuyu123
> > Sent: Monday, March 23, 2009 12:14 AM
> > To: mristudio-users at mristudio.org
> > Subject: [Mristudio-users] About the registration of the rat brain
> >
> >
> >
> > Hi,
> >
> > I want to kown where I can get the template of the rat brain.In the
> > Landermarker,I can only load the Human's template.Are there any templates
> > for registration of the rat brain? If not, how can I do the
> registration of
> > the rat brain.
> >
> > Thank you.
> >
> > Suyu
> >
> >
> >
> >
> >
> >
> > _____
> >
> > <> ?????????????????
> >
> > -------------- next part --------------
> > An HTML attachment was scrubbed...
> > URL:
> >
> >
> > ------------------------------
> >
> > Message: 2
> > Date: Wed, 25 Mar 2009 17:24:16 -0400
> > From: XIN LI <xli16 at jhmi.edu>
> > Subject: Re: [Mristudio-users] Problem with Landmarker not loading
> > subjects
> > To: "DTI Studio, ROI Editor, Landmarker Questions/Support"
> > <mristudio-users at mristudio.org>
> > Message-ID: <f54aa46a1c6f.49ca68c0 at johnshopkins.edu>
> > Content-Type: text/plain; charset=us-ascii
> >
> > Paul,
> >
> > When you loaded the subject, did you select "Analyze" as the image
> file
> > format in the image parameter window?
> >
> >
> > Xin
> >
> >
> > ----- Original Message -----
> > From: Paul Beach <pabeach1 at gmail.com>
> > Date: Wednesday, March 25, 2009 1:56 pm
> > Subject: [Mristudio-users] Problem with Landmarker not loading subjects
> > To: Mristudio-users at mristudio.org
> >
> >
> > > Hi everyone,
> > >
> > > So every once and a while I'll be on Landmarker and when I'm trying
> > > to load
> > > a subject I'll receive an error message saying "please enter a number
> > > between 0 and 4096." The first time this happened I just closed
> all
> > > my
> > > programs and reopened Landmarker and things worked again. Other
> > > times (such
> > > as the latest one) I went so far as to restart my computer, which
> > > lead to no
> > > effect.
> > >
> > > This is obviously a huge problem as I can't load subjects whatsoever.
> > >
> > > Any ideas?
> > >
> > > Thanks,
> > >
> > > Paul
> > >
> > > p.s. In case this is necessary information, I've been using landmarks
> > > to
> > > reorient subject brains and fiber tracts using affine/rigid
> > transformations.
> > > _______________________________________________
> > > Mristudio-users mailing list
> > > Mristudio-users at mristudio.org
> > >
> >
> >
> > ------------------------------
> >
> > Message: 3
> > Date: Fri, 27 Mar 2009 10:09:27 -0700
> > From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> > Subject: [Mristudio-users] loading AIR files
> > To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> > Message-ID:
> > <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4C9 at EMGMB1.ad.medctr.ucla.edu
> > >
> > Content-Type: text/plain; charset=us-ascii
> >
> > Hello,
> >
> > I think that I may have managed to use AIR's linear registration to
> > register my anatomic image to the mean B0 image in landmarker. The
> program
> > asks you to supply a filename, and after the process is complete I
> can find
> > a file of type "AIR" in the correct location, but can't open it. It's
> > obviously not analyze format, but when I try to open as "raw" I get
> the
> > error "please enter an integer between 1 and 4096" that pops up
> from time to
> > time. However, the boxes which contain 0s are greyed out and can't
> be
> > changed. Any suggestions as to how I can open and view the file?
> >
> > Also, the anatomic image filename in the open "subject" window now
> has the
> > name "updated_filename". Is this still the original, or is the registered
> > image? I can't open the original when this one is open, so I
> thought perhaps
> > this is still the original file just with "updated" appended, but
> I'm not
> > sure. If it's the registered image, the registration is not working
> very
> > well, so I'm hoping it's not.
> >
> > Thanks so much -
> >
> > Sarah Copeland
> >
> > IMPORTANT WARNING: This email (and any attachments) is only
> intended for
> > the use of the person or entity to which it is addressed, and may contain
> > information that is privileged and confidential. You, the
> recipient, are
> > obligated to maintain it in a safe, secure and confidential manner.
> > Unauthorized redisclosure or failure to maintain confidentiality may
> > subject you to federal and state penalties. If you are not the intended
> > recipient, please immediately notify us by return email, and delete
> this
> > message from your computer.
> >
> >
> >
> > ------------------------------
> >
> > Message: 4
> > Date: Fri, 27 Mar 2009 10:09:32 -0700
> > From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> > Subject: [Mristudio-users] loading AIR files
> > To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> > Message-ID:
> > <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CA at EMGMB1.ad.medctr.ucla.edu
> > >
> > Content-Type: text/plain; charset=us-ascii
> >
> > Hello,
> >
> > I think that I may have managed to use AIR's linear registration to
> > register my anatomic image to the mean B0 image in landmarker. The
> program
> > asks you to supply a filename, and after the process is complete I
> can find
> > a file of type "AIR" in the correct location, but can't open it. It's
> > obviously not analyze format, but when I try to open as "raw" I get
> the
> > error "please enter an integer between 1 and 4096" that pops up
> from time to
> > time. However, the boxes which contain 0s are greyed out and can't
> be
> > changed. Any suggestions as to how I can open and view the file?
> >
> > Also, the anatomic image filename in the open "subject" window now
> has the
> > name "updated_filename". Is this still the original, or is the registered
> > image? I can't open the original when this one is open, so I
> thought perhaps
> > this is still the original file just with "updated" appended, but
> I'm not
> > sure. If it's the registered image, the registration is not working
> very
> > well, so I'm hoping it's not.
> >
> > Thanks so much -
> >
> > Sarah Copeland
> >
> > IMPORTANT WARNING: This email (and any attachments) is only
> intended for
> > the use of the person or entity to which it is addressed, and may contain
> > information that is privileged and confidential. You, the
> recipient, are
> > obligated to maintain it in a safe, secure and confidential manner.
> > Unauthorized redisclosure or failure to maintain confidentiality may
> > subject you to federal and state penalties. If you are not the intended
> > recipient, please immediately notify us by return email, and delete
> this
> > message from your computer.
> >
> >
> >
> > ------------------------------
> >
> > Message: 5
> > Date: Fri, 27 Mar 2009 10:09:37 -0700
> > From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> > Subject: [Mristudio-users] loading AIR files
> > To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> > Message-ID:
> > <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CB at EMGMB1.ad.medctr.ucla.edu
> > >
> > Content-Type: text/plain; charset=us-ascii
> >
> > Hello,
> >
> > I think that I may have managed to use AIR's linear registration to
> > register my anatomic image to the mean B0 image in landmarker. The
> program
> > asks you to supply a filename, and after the process is complete I
> can find
> > a file of type "AIR" in the correct location, but can't open it. It's
> > obviously not analyze format, but when I try to open as "raw" I get
> the
> > error "please enter an integer between 1 and 4096" that pops up
> from time to
> > time. However, the boxes which contain 0s are greyed out and can't
> be
> > changed. Any suggestions as to how I can open and view the file?
> >
> > Also, the anatomic image filename in the open "subject" window now
> has the
> > name "updated_filename". Is this still the original, or is the registered
> > image? I can't open the original when this one is open, so I
> thought perhaps
> > this is still the original file just with "updated" appended, but
> I'm not
> > sure. If it's the registered image, the registration is not working
> very
> > well, so I'm hoping it's not.
> >
> > Thanks so much -
> >
> > Sarah Copeland
> >
> > IMPORTANT WARNING: This email (and any attachments) is only
> intended for
> > the use of the person or entity to which it is addressed, and may contain
> > information that is privileged and confidential. You, the
> recipient, are
> > obligated to maintain it in a safe, secure and confidential manner.
> > Unauthorized redisclosure or failure to maintain confidentiality may
> > subject you to federal and state penalties. If you are not the intended
> > recipient, please immediately notify us by return email, and delete
> this
> > message from your computer.
> >
> >
> >
> > ------------------------------
> >
> > Message: 6
> > Date: Fri, 27 Mar 2009 10:09:42 -0700
> > From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> > Subject: [Mristudio-users] loading AIR files
> > To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> > Message-ID:
> > <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CC at EMGMB1.ad.medctr.ucla.edu
> > >
> > Content-Type: text/plain; charset=us-ascii
> >
> > Hello,
> >
> > I think that I may have managed to use AIR's linear registration to
> > register my anatomic image to the mean B0 image in landmarker. The
> program
> > asks you to supply a filename, and after the process is complete I
> can find
> > a file of type "AIR" in the correct location, but can't open it. It's
> > obviously not analyze format, but when I try to open as "raw" I get
> the
> > error "please enter an integer between 1 and 4096" that pops up
> from time to
> > time. However, the boxes which contain 0s are greyed out and can't
> be
> > changed. Any suggestions as to how I can open and view the file?
> >
> > Also, the anatomic image filename in the open "subject" window now
> has the
> > name "updated_filename". Is this still the original, or is the registered
> > image? I can't open the original when this one is open, so I
> thought perhaps
> > this is still the original file just with "updated" appended, but
> I'm not
> > sure. If it's the registered image, the registration is not working
> very
> > well, so I'm hoping it's not.
> >
> > Thanks so much -
> >
> > Sarah Copeland
> >
> > IMPORTANT WARNING: This email (and any attachments) is only
> intended for
> > the use of the person or entity to which it is addressed, and may contain
> > information that is privileged and confidential. You, the
> recipient, are
> > obligated to maintain it in a safe, secure and confidential manner.
> > Unauthorized redisclosure or failure to maintain confidentiality may
> > subject you to federal and state penalties. If you are not the intended
> > recipient, please immediately notify us by return email, and delete
> this
> > message from your computer.
> >
> >
> >
> > ------------------------------
> >
> > Message: 7
> > Date: Fri, 27 Mar 2009 10:22:06 -0700
> > From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> > Subject: [Mristudio-users] loading AIR files
> > To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> > Message-ID:
> > <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CD at EMGMB1.ad.medctr.ucla.edu
> > >
> > Content-Type: text/plain; charset=us-ascii
> >
> > Hello,
> >
> > I think that I may have managed to use AIR's linear registration to
> > register my anatomic image to the mean B0 image in landmarker. The
> program
> > asks you to supply a filename, and after the process is complete I
> can find
> > a file of type "AIR" in the correct location, but can't open it. It's
> > obviously not analyze format, but when I try to open as "raw" I get
> the
> > error "please enter an integer between 1 and 4096" that pops up
> from time to
> > time. However, the boxes which contain 0s are greyed out and can't
> be
> > changed. Any suggestions as to how I can open and view the file?
> >
> > Also, the anatomic image filename in the open "subject" window now
> has the
> > name "updated_filename". Is this still the original, or is the registered
> > image? I can't open the original when this one is open, so I
> thought perhaps
> > this is still the original file just with "updated" appended, but
> I'm not
> > sure. If it's the registered image, the registration is not working
> very
> > well, so I'm hoping it's not.
> >
> > Thanks so much -
> >
> > Sarah Copeland
> >
> > IMPORTANT WARNING: This email (and any attachments) is only
> intended for
> > the use of the person or entity to which it is addressed, and may contain
> > information that is privileged and confidential. You, the
> recipient, are
> > obligated to maintain it in a safe, secure and confidential manner.
> > Unauthorized redisclosure or failure to maintain confidentiality may
> > subject you to federal and state penalties. If you are not the intended
> > recipient, please immediately notify us by return email, and delete
> this
> > message from your computer.
> >
> >
> >
> > ------------------------------
> >
> > _______________________________________________
> > Mristudio-users mailing list
> > Mristudio-users at mristudio.org
> >
> >
> >
> > End of Mristudio-users Digest, Vol 14, Issue 24
> > ***********************************************
> >
>
>
>
> --
> Paul Beach
> Michigan State University
> College of Osteopathic Medicine
> - Medical Scientist Training Program
> Neuroscience Program
> _______________________________________________
> Mristudio-users mailing list
> Mristudio-users at mristudio.org
>
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