[Mristudio-users] Mristudio-users Digest, Vol 14, Issue 24

Fri Mar 27 13:30:05 EDT 2009

Xin,

Yes, they are analyze files.  But I've actually figured out (and fixed) what
happened.  Apparently a (-) was being inserted into the "field of view
width" input.  I simply clicked on "raw image" and removed the (-) and
everything worked!

Thanks so much for your suggestions!

Paul

On Fri, Mar 27, 2009 at 1:22 PM, <mristudio-users-request at mristudio.org>wrote:

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> Today's Topics:
>
>   1. Re: About the registration of the rat brain (susumu)
>   2. Re: Problem with Landmarker not loading subjects (XIN LI)
>   3. loading AIR files (Copeland, Sarah A.)
>   4. loading AIR files (Copeland, Sarah A.)
>   5. loading AIR files (Copeland, Sarah A.)
>   6. loading AIR files (Copeland, Sarah A.)
>   7. loading AIR files (Copeland, Sarah A.)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 25 Mar 2009 17:19:51 -0400
> From: susumu <susumu at mri.jhu.edu>
> Subject: Re: [Mristudio-users] About the registration of the rat brain
> To: "'DTI Studio, ROI Editor,   Landmarker Questions/Support'"
>        <mristudio-users at mristudio.org>
> Message-ID: <7k7ed7$6rnn4i at ipex3.johnshopkins.edu>
> Content-Type: text/plain; charset="gb2312"
>
> Currently we are not providing rat atlases. We have mouse atlases, though.
>
>
>
>  _____
>
> From: mristudio-users-bounces at mristudio.org
> [mailto:mristudio-users-bounces at mristudio.org] On Behalf Of zhongsuyu123
> Sent: Monday, March 23, 2009 12:14 AM
> To: mristudio-users at mristudio.org
> Subject: [Mristudio-users] About the registration of the rat brain
>
>
>
> Hi,
>
>  I want to kown where I can get the template of the rat brain.In the
> Landermarker,I can only load the Human's template.Are there any templates
> for registration of the rat brain? If not, how can I do the registration of
> the rat brain.
>
>   Thank you.
>
>  Suyu
>
>
>
>
>
>
>  _____
>
>  <http://www.yeah.net> ?????????????????
>
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>
> ------------------------------
>
> Message: 2
> Date: Wed, 25 Mar 2009 17:24:16 -0400
> From: XIN LI <xli16 at jhmi.edu>
> Subject: Re: [Mristudio-users] Problem with Landmarker not loading
>        subjects
> To: "DTI Studio, ROI Editor,    Landmarker Questions/Support"
>        <mristudio-users at mristudio.org>
> Message-ID: <f54aa46a1c6f.49ca68c0 at johnshopkins.edu>
> Content-Type: text/plain; charset=us-ascii
>
> Paul,
>
> When you loaded the subject, did you select "Analyze" as the image file
> format in the image parameter window?
>
>
> Xin
>
>
> ----- Original Message -----
> From: Paul Beach <pabeach1 at gmail.com>
> Date: Wednesday, March 25, 2009 1:56 pm
> Subject: [Mristudio-users] Problem with Landmarker not loading subjects
> To: Mristudio-users at mristudio.org
>
>
> > Hi everyone,
> >
> >  So every once and a while I'll be on Landmarker and when I'm trying
> > to load
> >  a subject I'll receive an error message saying "please enter a number
> >  between 0 and 4096."  The first time this happened I just closed all
> > my
> >  programs and reopened Landmarker and things worked again.  Other
> > times (such
> >  as the latest one) I went so far as to restart my computer, which
> > lead to no
> >  effect.
> >
> >  This is obviously a huge problem as I can't load subjects whatsoever.
> >
> >  Any ideas?
> >
> >  Thanks,
> >
> >  Paul
> >
> >  p.s. In case this is necessary information, I've been using landmarks
> > to
> >  reorient subject brains and fiber tracts using affine/rigid
> transformations.
> > _______________________________________________
> >  Mristudio-users mailing list
> >  Mristudio-users at mristudio.org
> >
>
>
> ------------------------------
>
> Message: 3
> Date: Fri, 27 Mar 2009 10:09:27 -0700
> From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> Subject: [Mristudio-users] loading AIR files
> To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> Message-ID:
>        <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4C9 at EMGMB1.ad.medctr.ucla.edu
> >
> Content-Type: text/plain; charset=us-ascii
>
> Hello,
>
> I think that I may have managed to use AIR's linear registration to
> register my anatomic image to the mean B0 image in landmarker. The program
> asks you to supply a filename, and after the process is complete I can find
> a file of type "AIR" in the correct location, but can't open it. It's
> obviously not analyze format, but when I try to open as "raw" I get the
> error "please enter an integer between 1 and 4096" that pops up from time to
> time. However, the boxes which contain 0s are greyed out and can't be
> changed. Any suggestions as to how I can open and view the file?
>
> Also, the anatomic image filename in the open "subject" window now has the
> name "updated_filename". Is this still the original, or is the registered
> image? I can't open the original when this one is open, so I thought perhaps
> this is still the original file just with "updated" appended, but I'm not
> sure. If it's the registered image, the registration is not working very
> well, so I'm hoping it's not.
>
> Thanks so much -
>
> Sarah Copeland
>
> IMPORTANT WARNING:  This email (and any attachments) is only intended for
> the use of the person or entity to which it is addressed, and may contain
> information that is privileged and confidential.  You, the recipient, are
> obligated to maintain it in a safe, secure and confidential manner.
>  Unauthorized redisclosure or failure to maintain confidentiality may
> subject you to federal and state penalties. If you are not the intended
> recipient, please immediately notify us by return email, and delete this
> message from your computer.
>
>
>
> ------------------------------
>
> Message: 4
> Date: Fri, 27 Mar 2009 10:09:32 -0700
> From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> Subject: [Mristudio-users] loading AIR files
> To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> Message-ID:
>        <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CA at EMGMB1.ad.medctr.ucla.edu
> >
> Content-Type: text/plain; charset=us-ascii
>
> Hello,
>
> I think that I may have managed to use AIR's linear registration to
> register my anatomic image to the mean B0 image in landmarker. The program
> asks you to supply a filename, and after the process is complete I can find
> a file of type "AIR" in the correct location, but can't open it. It's
> obviously not analyze format, but when I try to open as "raw" I get the
> error "please enter an integer between 1 and 4096" that pops up from time to
> time. However, the boxes which contain 0s are greyed out and can't be
> changed. Any suggestions as to how I can open and view the file?
>
> Also, the anatomic image filename in the open "subject" window now has the
> name "updated_filename". Is this still the original, or is the registered
> image? I can't open the original when this one is open, so I thought perhaps
> this is still the original file just with "updated" appended, but I'm not
> sure. If it's the registered image, the registration is not working very
> well, so I'm hoping it's not.
>
> Thanks so much -
>
> Sarah Copeland
>
> IMPORTANT WARNING:  This email (and any attachments) is only intended for
> the use of the person or entity to which it is addressed, and may contain
> information that is privileged and confidential.  You, the recipient, are
> obligated to maintain it in a safe, secure and confidential manner.
>  Unauthorized redisclosure or failure to maintain confidentiality may
> subject you to federal and state penalties. If you are not the intended
> recipient, please immediately notify us by return email, and delete this
> message from your computer.
>
>
>
> ------------------------------
>
> Message: 5
> Date: Fri, 27 Mar 2009 10:09:37 -0700
> From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> Subject: [Mristudio-users] loading AIR files
> To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> Message-ID:
>        <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CB at EMGMB1.ad.medctr.ucla.edu
> >
> Content-Type: text/plain; charset=us-ascii
>
> Hello,
>
> I think that I may have managed to use AIR's linear registration to
> register my anatomic image to the mean B0 image in landmarker. The program
> asks you to supply a filename, and after the process is complete I can find
> a file of type "AIR" in the correct location, but can't open it. It's
> obviously not analyze format, but when I try to open as "raw" I get the
> error "please enter an integer between 1 and 4096" that pops up from time to
> time. However, the boxes which contain 0s are greyed out and can't be
> changed. Any suggestions as to how I can open and view the file?
>
> Also, the anatomic image filename in the open "subject" window now has the
> name "updated_filename". Is this still the original, or is the registered
> image? I can't open the original when this one is open, so I thought perhaps
> this is still the original file just with "updated" appended, but I'm not
> sure. If it's the registered image, the registration is not working very
> well, so I'm hoping it's not.
>
> Thanks so much -
>
> Sarah Copeland
>
> IMPORTANT WARNING:  This email (and any attachments) is only intended for
> the use of the person or entity to which it is addressed, and may contain
> information that is privileged and confidential.  You, the recipient, are
> obligated to maintain it in a safe, secure and confidential manner.
>  Unauthorized redisclosure or failure to maintain confidentiality may
> subject you to federal and state penalties. If you are not the intended
> recipient, please immediately notify us by return email, and delete this
> message from your computer.
>
>
>
> ------------------------------
>
> Message: 6
> Date: Fri, 27 Mar 2009 10:09:42 -0700
> From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> Subject: [Mristudio-users] loading AIR files
> To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> Message-ID:
>        <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CC at EMGMB1.ad.medctr.ucla.edu
> >
> Content-Type: text/plain; charset=us-ascii
>
> Hello,
>
> I think that I may have managed to use AIR's linear registration to
> register my anatomic image to the mean B0 image in landmarker. The program
> asks you to supply a filename, and after the process is complete I can find
> a file of type "AIR" in the correct location, but can't open it. It's
> obviously not analyze format, but when I try to open as "raw" I get the
> error "please enter an integer between 1 and 4096" that pops up from time to
> time. However, the boxes which contain 0s are greyed out and can't be
> changed. Any suggestions as to how I can open and view the file?
>
> Also, the anatomic image filename in the open "subject" window now has the
> name "updated_filename". Is this still the original, or is the registered
> image? I can't open the original when this one is open, so I thought perhaps
> this is still the original file just with "updated" appended, but I'm not
> sure. If it's the registered image, the registration is not working very
> well, so I'm hoping it's not.
>
> Thanks so much -
>
> Sarah Copeland
>
> IMPORTANT WARNING:  This email (and any attachments) is only intended for
> the use of the person or entity to which it is addressed, and may contain
> information that is privileged and confidential.  You, the recipient, are
> obligated to maintain it in a safe, secure and confidential manner.
>  Unauthorized redisclosure or failure to maintain confidentiality may
> subject you to federal and state penalties. If you are not the intended
> recipient, please immediately notify us by return email, and delete this
> message from your computer.
>
>
>
> ------------------------------
>
> Message: 7
> Date: Fri, 27 Mar 2009 10:22:06 -0700
> From: "Copeland, Sarah A." <SCopeland at mednet.ucla.edu>
> Subject: [Mristudio-users] loading AIR files
> To: "mristudio-users at mristudio.org" <mristudio-users at mristudio.org>
> Message-ID:
>        <F1A13CFB4AA1D04DBDDB2DC4183DA69749DFB4CD at EMGMB1.ad.medctr.ucla.edu
> >
> Content-Type: text/plain; charset=us-ascii
>
> Hello,
>
> I think that I may have managed to use AIR's linear registration to
> register my anatomic image to the mean B0 image in landmarker. The program
> asks you to supply a filename, and after the process is complete I can find
> a file of type "AIR" in the correct location, but can't open it. It's
> obviously not analyze format, but when I try to open as "raw" I get the
> error "please enter an integer between 1 and 4096" that pops up from time to
> time. However, the boxes which contain 0s are greyed out and can't be
> changed. Any suggestions as to how I can open and view the file?
>
> Also, the anatomic image filename in the open "subject" window now has the
> name "updated_filename". Is this still the original, or is the registered
> image? I can't open the original when this one is open, so I thought perhaps
> this is still the original file just with "updated" appended, but I'm not
> sure. If it's the registered image, the registration is not working very
> well, so I'm hoping it's not.
>
> Thanks so much -
>
> Sarah Copeland
>
> IMPORTANT WARNING:  This email (and any attachments) is only intended for
> the use of the person or entity to which it is addressed, and may contain
> information that is privileged and confidential.  You, the recipient, are
> obligated to maintain it in a safe, secure and confidential manner.
>  Unauthorized redisclosure or failure to maintain confidentiality may
> subject you to federal and state penalties. If you are not the intended
> recipient, please immediately notify us by return email, and delete this
> message from your computer.
>
>
>
> ------------------------------
>
> _______________________________________________
> Mristudio-users mailing list
> Mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/mristudio-users
>
>
> End of Mristudio-users Digest, Vol 14, Issue 24
> ***********************************************
>

-- 
Paul Beach
Michigan State University
College of Osteopathic Medicine
 - Medical Scientist Training Program
Neuroscience Program
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