<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<HTML tabIndex=-1><HEAD>
<META http-equiv=Content-Type content="text/html; charset=gb2312">
<META http-equiv=X-UA-Compatible content=IE=10>
<META name=GENERATOR content="MSHTML 10.00.9200.16798">
<STYLE id=owaParaStyle style="DISPLAY: none">P {
MARGIN-BOTTOM: 0px; MARGIN-TOP: 0px
}
</STYLE>
<STYLE type=text/css></STYLE>
<STYLE>@font-face {
font-family: 宋体;
}
@font-face {
font-family: Verdana;
}
P.MsoNormal {
FONT-SIZE: 10.5pt; FONT-FAMILY: "Times New Roman"; TEXT-ALIGN: justify; MARGIN: 0cm 0cm 0pt; TEXT-JUSTIFY: inter-ideograph
}
LI.MsoNormal {
FONT-SIZE: 10.5pt; FONT-FAMILY: "Times New Roman"; TEXT-ALIGN: justify; MARGIN: 0cm 0cm 0pt; TEXT-JUSTIFY: inter-ideograph
}
DIV.MsoNormal {
FONT-SIZE: 10.5pt; FONT-FAMILY: "Times New Roman"; TEXT-ALIGN: justify; MARGIN: 0cm 0cm 0pt; TEXT-JUSTIFY: inter-ideograph
}
A:link {
COLOR: blue; TEXT-DECORATION: underline
}
SPAN.MsoHyperlink {
COLOR: blue; TEXT-DECORATION: underline
}
A:visited {
COLOR: purple; TEXT-DECORATION: underline
}
SPAN.MsoHyperlinkFollowed {
COLOR: purple; TEXT-DECORATION: underline
}
SPAN.EmailStyle17 {
FONT-FAMILY: Verdana; FONT-WEIGHT: normal; COLOR: windowtext; FONT-STYLE: normal; TEXT-DECORATION: none
}
UNKNOWN {
FONT-SIZE: 10pt
}
BLOCKQUOTE {
MARGIN-BOTTOM: 0px; MARGIN-LEFT: 2em; MARGIN-TOP: 0px
}
OL {
MARGIN-BOTTOM: 0px; MARGIN-TOP: 0px
}
UL {
MARGIN-BOTTOM: 0px; MARGIN-TOP: 0px
}
</STYLE>
<META name=GENERATOR content="MSHTML 6.00.2900.2180">
<STYLE>@font-face {
font-family: 宋体;
}
@font-face {
font-family: Verdana;
}
@font-face {
font-family: @宋体;
}
P.MsoNormal {
FONT-SIZE: 10.5pt; FONT-FAMILY: "Times New Roman"; TEXT-ALIGN: justify; MARGIN: 0cm 0cm 0pt; TEXT-JUSTIFY: inter-ideograph
}
LI.MsoNormal {
FONT-SIZE: 10.5pt; FONT-FAMILY: "Times New Roman"; TEXT-ALIGN: justify; MARGIN: 0cm 0cm 0pt; TEXT-JUSTIFY: inter-ideograph
}
DIV.MsoNormal {
FONT-SIZE: 10.5pt; FONT-FAMILY: "Times New Roman"; TEXT-ALIGN: justify; MARGIN: 0cm 0cm 0pt; TEXT-JUSTIFY: inter-ideograph
}
A:link {
COLOR: blue; TEXT-DECORATION: underline
}
SPAN.MsoHyperlink {
COLOR: blue; TEXT-DECORATION: underline
}
A:visited {
COLOR: purple; TEXT-DECORATION: underline
}
SPAN.MsoHyperlinkFollowed {
COLOR: purple; TEXT-DECORATION: underline
}
SPAN.EmailStyle17 {
FONT-FAMILY: Verdana; FONT-WEIGHT: normal; COLOR: windowtext; FONT-STYLE: normal; TEXT-DECORATION: none; mso-style-type: personal-compose
}
DIV.Section1 {
page: Section1
}
</STYLE>
</HEAD>
<BODY style="FONT-SIZE: 10pt; FONT-FAMILY: verdana">
<DIV><FONT color=#000080 face=Verdana size=2>Dear experts,</FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080> Thank you for your
prompt response.</FONT></DIV>
<DIV> </DIV>
<DIV><FONT color=#000080> In my case, I want
to know the quantitative metric mapping information in some specific
regions.</FONT></DIV>
<DIV><FONT color=#000080> </FONT></DIV>
<DIV><FONT color=#000080> Can I get more
information about the LDDMMMatrix.dat? Can I use Matlab or ImageJ to load
LDDMMMatrix.dat? If so, how?</FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080> </FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080>Best regards,</FONT></DIV>
<DIV><FONT color=#000080>Shangbin</FONT></DIV>
<DIV><FONT color=#000080 face=Verdana size=2></FONT> </DIV>
<DIV><FONT color=#000080 face=Verdana size=2></FONT> </DIV>
<DIV><FONT color=#c0c0c0 face=Verdana size=2>2014-03-08 </FONT></DIV><FONT
color=#000080 face=Verdana size=2>
<HR SIZE=1 align=left color=#b5c4df style="WIDTH: 100px">
</FONT>
<DIV><FONT color=#c0c0c0 face=Verdana size=2><SPAN>Shangbin Chen Ph.D.</SPAN>
</FONT></DIV>
<HR SIZE=1 color=#b5c4df>
<DIV><FONT face=Verdana size=2><STRONG>发件人：</STRONG> Xin Li </FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>发送时间：</STRONG> 2014-03-07 23:07:00
</FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>收件人：</STRONG> DTI Studio, ROI Editor,
DiffeoMap Questions/Support </FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>抄送：</STRONG> </FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>主题：</STRONG> Re: [Mristudio-users] How to
use the output matrix of LDDMM fromDiffeoMap (resend without the attached file)
</FONT></DIV>
<DIV><FONT face=Verdana size=2></FONT> </DIV>
<DIV><FONT face=Verdana size=2>
<DIV id=divtagdefaultwrapper
style="FONT-SIZE: 12pt; FONT-FAMILY: Calibri, Arial, Helvetica, sans-serif; COLOR: #000000; MARGIN: 0px"
name="divtagdefaultwrapper">
<P class=owaPara>The LDDMMatrix.dat file gives the metric mapping information.
You can apply this mapping file to an image by clicking "Load
Transformation Matrix" and selecting "LDDMM Matrix (Raw Data)".</P>
<P class=owaPara> </P>
<P class=owaPara> </P>
<P class=owaPara>Xin</P>
<P class=owaP></P>
<DIV style="COLOR: #282828">
<HR tabIndex=-1 style="DISPLAY: inline-block; WIDTH: 98%">
<DIV id=divRplyFwdMsg dir=ltr><FONT color=#000000 face="Calibri, sans-serif"
style="FONT-SIZE: 11pt"><B>From:</B> mristudio-users-bounces@mristudio.org
<mristudio-users-bounces@mristudio.org> on behalf of Shangbin Chen Ph.D.
<sbchen@mail.hust.edu.cn><BR><B>Sent:</B> Thursday, March 6, 2014 8:30
PM<BR><B>To:</B> DTI Studio, ROI Editor,DiffeoMap
Questions/Support<BR><B>Subject:</B> [Mristudio-users] How to use the output
matrix of LDDMM from DiffeoMap (resend without the attached file)</FONT>
<DIV> </DIV></DIV>
<DIV>
<DIV><FONT color=#000080>Dear experts,</FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080> Many thanks for your
help in DiffeoMap. I have got to know how to use the output matrix of
Landmark-based Affine registration.</FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080> Today, I did 16 Landmark-based
LDDMM. The parameters were 3D downsample X:2, Y:2, Z:2 with some other default
parameters. I noticed two files (LDDMMMatrix.dat and LDDMMMatrix.hdr) had been
saved in my folder. In my case, the template and
the subject 3D images are both 256x256x512 (~32 MB). But the
output data LDDMMMatrix.dat are about 393 MB. Here I have two
questions:</FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080>1) What is the content inside the
LDDMMMatrix.dat?</FONT></DIV>
<DIV><FONT color=#000080>2) How to use the LDDMMmatrix.dat?</FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080>Best regards,</FONT></DIV>
<DIV><FONT color=#000080>Shangbin</FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080></FONT></DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080 face=Verdana size=2></FONT> </DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080></FONT> </DIV>
<DIV><FONT color=#000080 face=Verdana size=2></FONT> </DIV>
<DIV><FONT color=#c0c0c0 face=Verdana size=2>2014-03-05 </FONT></DIV><FONT
color=#000080 face=Verdana size=2>
<HR SIZE=1 align=left color=#b5c4df style="WIDTH: 100px">
</FONT>
<DIV><FONT color=#c0c0c0 face=Verdana size=2><SPAN>Shangbin Chen Ph.D.</SPAN>
</FONT></DIV>
<HR SIZE=1 color=#b5c4df>
<DIV><FONT face=Verdana size=2><STRONG>发件人：</STRONG> Susumu Mori </FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>发送时间：</STRONG> 2014-03-04 07:15:55
</FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>收件人：</STRONG> DTI Studio, ROI Editor,
DiffeoMap Questions/Support </FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>抄送：</STRONG> </FONT></DIV>
<DIV><FONT face=Verdana size=2><STRONG>主题：</STRONG> Re: [Mristudio-users] How to
use the output matrix of Affineregistration from DiffeoMap </FONT></DIV>
<DIV><FONT face=Verdana size=2></FONT></DIV>
<DIV><FONT face=Verdana size=2>
<DIV dir=ltr>You can load this matrix to DiffoeMap and apply it to the image you
loaded.</DIV>
<DIV class=gmail_extra><BR><BR>
<DIV class=gmail_quote>On Mon, Mar 3, 2014 at 9:12 AM, Xin Li <SPAN
dir=ltr><<A href="mailto:xli16@jhmi.edu"
target=_blank>xli16@jhmi.edu</A>></SPAN> wrote:<BR>
<BLOCKQUOTE class=gmail_quote
style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">The
first 3 rows is the 3x3 rotation matrix. The last row is the translation
vector.<BR><BR>________________________________________<BR>From: <A
href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</A>
[<A
href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</A>]
on behalf of Shangbin Chen Ph.D. [<A
href="mailto:sbchen@mail.hust.edu.cn">sbchen@mail.hust.edu.cn</A>]<BR>Sent:
Sunday, March 2, 2014 9:20 PM<BR>To: DTI Studio, ROI Editor,DiffeoMap
Questions/Support<BR>Subject: [Mristudio-users] How to use the output matrix
of Affine registration from DiffeoMap<BR>
<DIV>
<DIV class=h5><BR>Dear experts,<BR><BR> I am using
DiffeoMap for 3D registration. I have done markers-based affine registration
with satisfying result. But I cannot understant the meaning of the output
matrix which is 4x3 array. Could you tell me some details on this matrix? Or
how to use the matrix to do affine transformation?<BR><BR>Best
regards,<BR>Shangbin<BR><BR><BR>2014-03-03<BR>________________________________<BR>Shangbin
Chen
Ph.D.<BR>________________________________<BR><BR></DIV></DIV>_______________________________________________<BR>mristudio-users
mailing list<BR><A
href="mailto:mristudio-users@mristudio.org">mristudio-users@mristudio.org</A><BR><A
href="http://lists.mristudio.org/mailman/listinfo/"
target=_blank>http://lists.mristudio.org/mailman/listinfo/</A><BR>Unsubscribe,
send a blank email to: <A
href="mailto:mristudio-users-unsubscribe@mristudio.org">mristudio-users-unsubscribe@mristudio.org</A><BR></BLOCKQUOTE></DIV><BR></DIV></FONT></DIV></DIV></DIV></DIV></FONT></DIV></BODY></HTML>