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<p class="MsoNormal">Dear Support<o:p></o:p></p>
<p class="MsoNormal"> First, thanks for writing such a powerful and useful set of programs. I have a question regarding the mouse brain atlas maps.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">The segmentation of the mouse brain appears very useful. I am processing data from a number of users doing mouse brain. Unfortunately, for each experiment, the exact dimensions of each set of scans can vary as can the mouse age.
<o:p></o:p></p>
<p class="MsoNormal"> I have been using the mouse atlas for registration to a standard mouse so as to compare groups of mice objectively. This is fine, and I can resample the standard mice easily in diffeomap.
<o:p></o:p></p>
<p class="MsoNormal"> My question is whether there is a simple way to resample the segmentation maps for the mouse brain. This would give me a powerful way to quickly get detailed information back to the user. I can resample the raw ROI data,
but I lose the label information (ei – the objects become “object 1, object 2, etc” instead of “hippocampus-L, hippocampus-R, etc”.
<o:p></o:p></p>
<p class="MsoNormal">Other than typing it in each time, is there a way to import the labels into ROIeditor to get them back? I have tried using a new header, but it doesn’t seem to preserve the object labels.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">If there is a more detailed manual for ROIeditor, I would greatly appreciate a pointer for it as I see it being a very useful tool for my work.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thank you,<o:p></o:p></p>
<p class="MsoNormal">Steen Pedersen<o:p></o:p></p>
<p class="MsoNormal">(registered email: pedersen@bcm.edu)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Steen E. Pedersen, Ph.D.<o:p></o:p></p>
<p class="MsoNormal">Associate Professor<o:p></o:p></p>
<p class="MsoNormal">Small Animal Imaging Facility<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Phone: 832-824-3399<o:p></o:p></p>
<p class="MsoNormal">Cell: 713-726-0041<o:p></o:p></p>
<p class="MsoNormal">email: sepeders@texaschildrens.org<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Feigin Center, Room C.0200.02<o:p></o:p></p>
<p class="MsoNormal">Texas Childrens Hospital<o:p></o:p></p>
<p class="MsoNormal">1102 Bates St., Houston, TX 77030<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><i><span style="font-size:12.0pt">éala éarendel engla beorhtast<o:p></o:p></span></i></p>
<p class="MsoNormal"><o:p> </o:p></p>
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