<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Maya,<div><br></div><div>Thank you for your interest in our neonatal atlas.</div><div>Please visit</div><div><a href="http://cmrm.med.jhmi.edu/">http://cmrm.med.jhmi.edu/</a></div><div>then click 'Atlas' then 'Neonate brain atlas' in the leftmost column.</div><div>After registration, you can download our neonatal atlas.</div><div>You can normalize your image to this atlas using DiffeoMap (or whatever software you want, including SPM or FSL).</div><div>The Diffeomap will output 2 transformation matrices at the same time. One is a Kimap (transformation from your image to the template) and the other is an Hmap (transformation from the template to your image). </div><div>You can normalize you image to the template space by applying the Kimap to your image.</div><div>If you want to overlay our parcellation map to your image in original space, you can apply Hmap to our parcellation map to create the parcellation map in your original space. </div><div>To measure scalar values (e.g., FA, MD, etc) of each structure (parcel), you can use the ROIeditor.</div><div>Hope this helps.</div><div><br></div><div>Best regards,</div><div><br></div><div>Kenichi Oishi<br><div apple-content-edited="true">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>-------------------------------------------------------------</div><div>Kenichi Oishi, MD, PhD</div><div>Assistant Professor</div><div>Department of Radiology</div><div>Johns Hopkins University School of Medicine</div><div><a href="mailto:koishi@mri.jhu.edu">koishi@mri.jhu.edu</a></div><div>-------------------------------------------------------------</div></div>
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<br><div><div>On Nov 20, 2011, at 7:25 AM, susumu mori wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">We currently have several atlases for pediatric populations. Please contact following colleagues;<div><br></div><div>0 month: Dr. Kenichi Oishi</div><div>18 month and 24 month: Dr. Shoko Yoshida</div><div><br></div><div>You can use these atlases as a template in DiffeoMap. The rest of the procedures will be the same as adult atlas-based studies.<br>
<br><div class="gmail_quote">On Sun, Nov 20, 2011 at 6:36 AM, maya weinstein <span dir="ltr"><<a href="mailto:weinmaya@gmail.com">weinmaya@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div dir="ltr"><div>Hi MRIStudio support,</div><div> </div><div>I read Oishi et al (2011) "<font size="4" face="AdvTT5235d5a9"><font size="4" face="AdvTT5235d5a9">Multi-contrast human neonatal brain atlas: Application to normal neonate
<p>development analysis" NeuroImage.</p><p>Is there a way to coregister my data to this atlas and then use this atlas as a reference in the ROIEditor?</p><p>Thanks,</p><p>Maya</p></font></font><br clear="all"><br>-- <br>
</div><div dir="ltr">Maya Weinstein<br>Department of Psychology, Bar-Ilan University<br>Functional Brain Imaging Unit, Wohl Institute for Advanced Imaging, Tel-Aviv Sourasky Medical Center</div><br>
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