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<p class="MsoNormal">Hi all,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I have a question about saving ROIs from ROIEditor and then using them for tractography.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I was hoping to perform tractography for each of my participants, but because my anatomy knowledge is limited, I wanted to avoid having to manually delineating regions. I have processed the data so the JHU_MNI_SS_WMPM_TypeII is in diffusion
space; my question is this – is it valid to use one (or more) of these atlas-defined structures as ROIs for tractography?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">If so, how can I isolate and save one (or more) of the atlas regions as a single ROI on its own? I have tried ‘hide all’ and unhiding the one/s I am interested it but it doesn’t appear to work. Apart from deleting all of the (many) structures
I’m not interested in, is there a way to do this properly?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Also, is ‘binary map’ the best format to save ROIs to use in fibre tracking?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Any advice greatly appreciated. Thank you kindly for your help! <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Kind regards,<o:p></o:p></p>
<p class="MsoNormal">Jo<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-family:"Georgia","serif";color:#00B0F0">Joanne Lin<o:p></o:p></span></b></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif"">BPharm (Hons), RegPharmNZ<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif""><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif"">Pharmacist/PhD Candidate<br>
School of Pharmacy<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif"">Faculty of Medical & Health Sciences<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif"">The University of Auckland<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif"">Private Bag 92019<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif"">Auckland, New Zealand<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.0pt;font-family:"Georgia","serif"">+64 9 373 7599 Ext 88468</span><span style="font-size:10.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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