<div dir="ltr">Hello Susumu and other users;<br><br>I have questions about the ROI editor and DiffeoMap. <br>I have ex vivo 3 D DTI data from mouse brain. I have generated FA and MD map in analyze format then I open the FA map in ROI editor to draw the ROI and I am able to draw the ROI but when I click on save button to save the ROI. The message appeared that there is no ROI and I didn't get any statistical number for the data.<br>
I want to know that the way I am doing is correct or wrong way? <br>Can you suggest any tutorial for that how I can used these software. I also saw there is a option for atlas template, Did I need these atlas for mouse brain.<br>
<br>And for DiffeoMap almost same type of problem I got.<br>When I loaded the FA map on DiffeoMap and Click on AIR slice by slice linear the message appeared makeaheader.<br><br>Any body can suggest what I can do, any suggestion and help will highly appreciated.<br>
<br>Thanks<br><br>Manoj<br><br><div class="gmail_quote">On Thu, Jul 28, 2011 at 8:22 AM, susumu mori <span dir="ltr"><<a href="mailto:susumu@mri.jhu.edu">susumu@mri.jhu.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Hi Manoj,<div><br></div><div>Just add one thing. DtiStudio has AIR to coregister images within one DTI data set. If you want to coregister images from different animals, you need to use DiffeoMap.</div><div><br></div><div>
As SC mentioned, after you process DTI and obtain FA, MD, etc, you'd better move to RoiEditor, which has much better ROI drawing functions.</div><div><br></div><div><font color="#888888">Susumu</font><div><div></div>
<div class="h5"><br><br><div class="gmail_quote">On Tue, Jul 26, 2011 at 1:36 PM, Manoj Kumar Verma <span dir="ltr"><<a href="mailto:vermanojk@gmail.com" target="_blank">vermanojk@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Seongjin;<br>Thanks<div><div></div><div><br><br><br><div class="gmail_quote">On Tue, Jul 26, 2011 at 11:35 AM, [Seongjin] <span dir="ltr"><<a href="mailto:choisj70@gmail.com" target="_blank">choisj70@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
DTI studio is good for post-processing and deterministic tractography. <br>For ROI-based data analysis, it would be much better to try ROI-editor (a sister software to DTI studio).<br><br>Best,<br>-SC<br><br><div class="gmail_quote">
<div><div></div><div>
On Tue, Jul 26, 2011 at 9:16 AM, manoj kumar <span dir="ltr"><<a href="mailto:kmanoj@mail.med.upenn.edu" target="_blank">kmanoj@mail.med.upenn.edu</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div><div></div><div>
<div dir="ltr">Hello All user;<br><br>I am working on mouse animal model and have ex
vivo brain DTI (high resolution 3D) data. I want to co-registered these
data set and want to analyse the data using DTI studio.<br>My problem
is that when I have tried to co-register two data set using AIR method
in DTI studio and try to draw ROI and save it in Binary Image and Binary
map format and again try to import same ROI even in same data set there
was an error showing: unrecognized image-ROI data file.<br>
<br>Any help and suggestion are highly appreciated.<br><br>Thanks<br><br>Manoj<br><br><br></div>
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