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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Dear Chunxiang,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Your email was probably bounced because of the size of the attachment. (You can try just sending the text as an e-mail to find out.)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Your steps sound correct. It’s possible that the AIR is taking out the first slice because of motions or misregistration between volumes, and this could be
a problem with your last slice as well. I don’t have much experience with AIR myself yet, but is there a step to apply the AIR registration to the gradient table? Your FA images certainly look ‘cleaner’ after the AIR process, so it definitely seems worthwhile.
As far as the correctness of the gradients, are the colors in the color FA map correct (Color Map 0: red corpus callosum, green optic radiations)?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Alex<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> me [mailto:favusome@gmail.com]
<br>
<b>Sent:</b> Monday, June 13, 2011 10:29 PM<br>
<b>To:</b> Dresner, Alex<br>
<b>Subject:</b> help for DTI FA map<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Dear Alex,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">I am a newbie for dtistudio who had encountered big problem as described in the attached. My email to the DTIstudion forum was bounced back, luckily that I saw that you are helping people with all these questions. Please help me since I
have been tangled there and can't move forward...Thank you very much for your time.
<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Best Regards,<o:p></o:p></p>
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<p class="MsoNormal">Chunxiang <o:p></o:p></p>
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