Hi Katja, <br><br>Are you using DtiStudio or DiffeoMap? Both has AIR but the former should be used only for intra-DTI image registration. In your case, you want inter-scan (anatomical vs DTI) registration, which needs the latter (DiffeoMap). <br>
<br>Susumu<br><br><div class="gmail_quote">On Thu, Aug 26, 2010 at 7:44 AM, Katja Doerschner <span dir="ltr"><<a href="mailto:katja@bilkent.edu.tr">katja@bilkent.edu.tr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<div style="word-wrap: break-word;">Dear DTI studio users,<div><br></div><div>I am trying to coregister a 3D anatomical (Siemens, 176 Sagittal slices, y224 z256) to DWI mosaic (Siemens mosaic, 50 axial slices x128 y128).</div>
<div><br></div><div>When I am loading each of these data sets into the viewer they look fine, however the coregistered images (using Automatic Image Registration) just look very distorted and the views of the coregistered image are switched i.e. sagittal shows now an axial, coronal a sagittal and axial the coronal view. </div>
<div><br></div><div>Has anyone encountered this before?</div><div> <br><div>
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<div><font face="Arial">Thank you.</font></div><div><font face="Arial"><br></font></div><div><font face="Arial">Katja</font></div></div></span></div></span></span>
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