Thanks a lot.  Appreciate it very much. <br><br>BTW: Another question in the DTI Studio, is it possible to place the ROI at the center of the crosshairs without offset? <br><br>Minjie<br><br>On Mon, Jun 28, 2010 at 3:44 PM, Xin Li <span dir="ltr">&lt;<a href="mailto:xli16@jhmi.edu">xli16@jhmi.edu</a>&gt;</span> wrote:<br>
<div class="gmail_quote"><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">Sorry. it should be &quot;the ROI boundary&quot; not &quot;the voxel boundary&quot;.<br>

<div class="im"><br>
<br>
Xin<br>
<br>
<br>
<br>
----- Original Message -----<br>
From: Minjie Wu &lt;<a href="mailto:minjiewu@gmail.com">minjiewu@gmail.com</a>&gt;<br>
</div><div class="im">Date: Monday, June 28, 2010 3:45 pm<br>
</div><div class="im">Subject: Re: [Mristudio-users] define ROI in DTI Studio and ROI Editor<br>
</div><div class="im">To: &quot;DTI Studio, ROI Editor, DiffeoMap Questions/Support&quot; &lt;<a href="mailto:mristudio-users@mristudio.org">mristudio-users@mristudio.org</a>&gt;<br>
<br>
<br>
&gt; Hello Xin,<br>
&gt;<br>
&gt;  I have created two ellipsis ROIs of the same size (4x4). The one on<br>
&gt; the left<br>
&gt;  is added to an object, and the one on the right is not added to an object.<br>
&gt;  The object looks like an arrow instead of an ellipsis. Please see the<br>
&gt;  screenshot through the link.<br>
&gt;<br>
&gt;<br>
&gt;<br>
</div><div><div></div><div class="h5">&gt;  Thanks,<br>
&gt;  Minjie<br>
&gt;<br>
&gt;  On Mon, Jun 28, 2010 at 1:47 PM, Xin Li &lt;<a href="mailto:xli16@jhmi.edu">xli16@jhmi.edu</a>&gt; wrote:<br>
&gt;<br>
&gt;  &gt; Hello Minjie,<br>
&gt;  &gt;<br>
&gt;  &gt; May I ask what you mean about &quot;ellipsis no longer looks like ellipsis&quot;?<br>
&gt;  &gt;<br>
&gt;  &gt;<br>
&gt;  &gt; Xin<br>
&gt;  &gt;<br>
&gt;  &gt;<br>
&gt;  &gt; ----- Original Message -----<br>
&gt;  &gt; From: Minjie Wu &lt;<a href="mailto:minjiewu@gmail.com">minjiewu@gmail.com</a>&gt;<br>
&gt;  &gt; Date: Monday, June 28, 2010 1:45 pm<br>
&gt;  &gt; Subject: [Mristudio-users] define ROI in DTI Studio and ROI Editor<br>
&gt;  &gt; To: <a href="mailto:mristudio-users@mristudio.org">mristudio-users@mristudio.org</a><br>
&gt;  &gt;<br>
&gt;  &gt;<br>
&gt;  &gt; &gt; Hello All,<br>
&gt;  &gt; &gt;<br>
&gt;  &gt; &gt;  We need to measure FA in the substantia nigra (SN) in our<br>
&gt; project. Small<br>
&gt;  &gt; &gt;  ellipse ROIs (4x4) are placed in these area using DTI Studio and<br>
&gt; ROI<br>
&gt;  &gt; &gt; Editor<br>
&gt;  &gt; &gt;  respectively.<br>
&gt;  &gt; &gt;<br>
&gt;  &gt; &gt;  1. For DTI Studio, the ROI is not placed at the center of the<br>
&gt;  &gt; crosshairs,<br>
&gt;  &gt; &gt;  but instead there is an offset. Is there any way to fix or<br>
&gt; adjust this?<br>
&gt;  &gt; &gt;<br>
&gt;  &gt; &gt;  2. For ROI Editor, the ellipsis ROI (4x4) is placed in SN, and the<br>
&gt;  &gt; location<br>
&gt;  &gt; &gt;  of the ROI can be adjusted, then added to an object. However<br>
&gt; once the<br>
&gt;  &gt; &gt;  ellipsis ROI is combined to an object, ellipsis no longer looks<br>
&gt; like<br>
&gt;  &gt; &gt;  ellipsis. Is there any way to avoid this?<br>
&gt;  &gt; &gt;<br>
&gt;  &gt; &gt;  Thank you very much.<br>
&gt;  &gt; &gt;<br>
&gt;  &gt; &gt;  Sincerely,<br>
&gt;  &gt; &gt;<br>
&gt;  &gt; &gt;  --<br>
&gt;  &gt; &gt;  Minjie Wu, PhD<br>
&gt;  &gt; &gt;  Department of Neurology<br>
&gt;  &gt; &gt;  Northwestern University<br>
&gt;  &gt; &gt;  710 N Lake Shore Dr<br>
&gt;  &gt; &gt;  Abbott Hall, 11th floor, Suite 1107<br>
&gt;  &gt; &gt;  Chicago IL 60611<br>
&gt;  &gt; &gt;  Phone: 312-503-1522<br>
&gt;  &gt; &gt; _______________________________________________<br>
&gt;  &gt; &gt;  Mristudio-users mailing list<br>
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&gt;  &gt; &gt;<br>
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</div></div><div><div></div><div class="h5">&gt;  &gt; Unsubscribe, send a blank email to:<br>
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&gt;  &gt;<br>
&gt;<br>
&gt;<br>
&gt;<br>
&gt;  --<br>
&gt;  Minjie Wu, PhD<br>
&gt;  Department of Neurology<br>
&gt;  Northwestern University<br>
&gt;  710 N Lake Shore Dr<br>
&gt;  Abbott Hall, 11th floor, Suite 1107<br>
&gt;  Chicago IL 60611<br>
&gt;  Phone: 312-503-1522<br>
&gt; _______________________________________________<br>
&gt;  Mristudio-users mailing list<br>
&gt;  <a href="mailto:Mristudio-users@mristudio.org">Mristudio-users@mristudio.org</a><br>
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