<HTML dir=ltr><HEAD>
<META http-equiv=Content-Type content="text/html; charset=unicode">
<META content="MSHTML 6.00.2900.3698" name=GENERATOR></HEAD>
<BODY>
<DIV id=idOWAReplyText66707 dir=ltr>
<DIV dir=ltr><FONT face=Arial color=#000000 size=2>Sorry Dr.Mori, i don't know whether i have understood you correctly, </FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2></FONT> </DIV>
<DIV dir=ltr><FONT color=#0000ff>The default setting is to create a duplicate data that are AIRed which have AIR_xxx name. </FONT><FONT color=#0000ff>So, all b0 and DWIs are duplicated.</FONT></DIV>
<DIV dir=ltr><FONT color=#0000ff></FONT> </DIV>
<DIV dir=ltr><FONT color=#0000ff><FONT color=#000000>After loading the files and gradient table i click on the Tensor, Colormap tab under calculation tab after this i click on image tab at the bottom right side corner of the DTI studio and then click on the save option where i can find FA, b0 and all the images so these b0 and other dwi images are basically AIRed i.e. corrected for eddy/motion correction</FONT>.</FONT></DIV>
<DIV dir=ltr><FONT color=#0000ff></FONT> </DIV>
<DIV dir=ltr><FONT color=#000000>Am i right.</FONT></DIV>
<DIV dir=ltr><FONT color=#000000></FONT> </DIV>
<DIV dir=ltr><FONT color=#000000>Thanks very much</FONT></DIV>
<DIV dir=ltr><FONT color=#000000></FONT> </DIV>
<DIV dir=ltr><FONT color=#000000>venkat</FONT></DIV></DIV>
<DIV dir=ltr><BR>
<HR tabIndex=-1>
<FONT face=Tahoma size=2><B>From:</B> mristudio-users-bounces@mristudio.org on behalf of susumu mori<BR><B>Sent:</B> Thu 6/17/2010 5:32 PM<BR><B>To:</B> DTI Studio, ROI Editor, DiffeoMap Questions/Support<BR><B>Subject:</B> Re: [Mristudio-users] Eddy current and motion corrected data set<BR></FONT><BR></DIV>
<DIV>In DtiStudio, eddy/motion correction is done simultaneously using AIR affine transformation. The default setting is to create a duplicate data that are AIRed which have AIR_xxx name. So, all b0 and DWIs are duplicated. You can save these images. You can then reload these images to calculate FA and other DTI matrices that are eddy/motion corrected. <BR><BR>
<DIV class=gmail_quote>On Thu, Jun 17, 2010 at 11:16 AM, Rajagopalan, Venkateswaran <SPAN dir=ltr><<A href="mailto:rajagov2@ccf.org">rajagov2@ccf.org</A>></SPAN> wrote:<BR>
<BLOCKQUOTE class=gmail_quote style="PADDING-LEFT: 1ex; MARGIN: 0pt 0pt 0pt 0.8ex; BORDER-LEFT: rgb(204,204,204) 1px solid">
<DIV>
<DIV><FONT face=Arial color=#000000 size=2>Dear All,</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>I am wondering how to get dti data (all B0 and DW images) after eddy current and motion correction steps or in fact the images which are in same space as FA or other DTI metrics in DTI studio. I need these images in order to register them with anatomical datasets.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Thanks </FONT> </DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Venkat</FONT></DIV>
<P></P><PRE>===================================
<P class=MsoNormal><FONT face=Webdings color=green size=5><SPAN style="FONT-SIZE: 18pt; COLOR: green; FONT-FAMILY: Webdings">P</SPAN></FONT><FONT face=Calibri color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Calibri"> </SPAN></FONT><FONT face=Arial color=green size=1><SPAN style="FONT-SIZE: 7pt; COLOR: green; FONT-FAMILY: Arial">Please consider the environment before printing this e-mail</SPAN></FONT></P>
Cleveland Clinic is ranked one of the top hospitals
in America by U.S.News & World Report (2009).
Visit us online at <A href="http://www.clevelandclinic.org/" target=_blank>http://www.clevelandclinic.org</A> for
a complete listing of our services, staff and
locations.
Confidentiality Note: This message is intended for use
only by the individual or entity to which it is addressed
and may contain information that is privileged,
confidential, and exempt from disclosure under applicable
law. If the reader of this message is not the intended
recipient or the employee or agent responsible for
delivering the message to the intended recipient, you are
hereby notified that any dissemination, distribution or
copying of this communication is strictly prohibited. If
you have received this communication in error, please
contact the sender immediately and destroy the material in
its entirety, whether electronic or hard copy. Thank you.
</PRE></DIV><BR>_______________________________________________<BR>Mristudio-users mailing list<BR><A href="mailto:Mristudio-users@mristudio.org">Mristudio-users@mristudio.org</A><BR><A href="http://lists.mristudio.org/mailman/listinfo/" target=_blank>http://lists.mristudio.org/mailman/listinfo/</A><BR>Unsubscribe, send a blank email to: <A href="mailto:Mristudio-users-unsubscribe@mristudio.org">Mristudio-users-unsubscribe@mristudio.org</A><BR><BR></BLOCKQUOTE></DIV><BR></DIV>
<P><pre wrap>===================================
<p class=MsoNormal><font size=5 color=green face=Webdings><span
style='font-size:18.0pt;font-family:Webdings;color:green'>P</span></font><font
size=2 color=navy face=Calibri><span style='font-size:10.0pt;font-family:Calibri;
color:navy'> </span></font><font size=1 color=green face=Arial><span
style='font-size:7.0pt;font-family:Arial;color:green'>Please consider the environment before printing this e-mail</span></font><o:p></o:p></p>
Cleveland Clinic is ranked one of the top hospitals
in America by U.S.News & World Report (2009).
Visit us online at http://www.clevelandclinic.org for
a complete listing of our services, staff and
locations.
Confidentiality Note: This message is intended for use
only by the individual or entity to which it is addressed
and may contain information that is privileged,
confidential, and exempt from disclosure under applicable
law. If the reader of this message is not the intended
recipient or the employee or agent responsible for
delivering the message to the intended recipient, you are
hereby notified that any dissemination, distribution or
copying of this communication is strictly prohibited. If
you have received this communication in error, please
contact the sender immediately and destroy the material in
its entirety, whether electronic or hard copy. Thank you.
</pre></P></BODY></HTML>