<div>Thanks alot! This is really helpful.</div>
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<div>Youngbin<br><br></div>
<div class="gmail_quote">On Wed, May 26, 2010 at 9:55 PM, susumu mori <span dir="ltr"><<a href="mailto:susumu@mri.jhu.edu">susumu@mri.jhu.edu</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Hi all,<br><br>We know that the manual is the weakest link of DtiStudio / MriStudio.<br><br>You can find a manual here (v. 2.10.6, sorry years old) at <a href="https://www.mristudio.org/wiki/user_manual" target="_blank">https://www.mristudio.org/wiki/user_manual</a>.<br>
<br>In this page, there is also an online manual, but it is based on this *.doc file. This is for DtiStudio.<br>For DiffeoMap and RoiEditor, there is only the web manuals, which you can also find in the same site.<br><br>
Also, there is videos from my tutorial.<br><br><a href="http://162.129.247.245/Protocol/DTS/Tutorial/index.htm" target="_blank">http://162.129.247.245/Protocol/DTS/Tutorial/index.htm</a><br><br>I hope these are helpful.<br>
<font color="#888888"><br>susumu</font>
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<div class="gmail_quote">On Tue, May 25, 2010 at 3:21 PM, Anil Shetty <span dir="ltr"><<a href="mailto:ASHETTY@beaumont.edu" target="_blank">ASHETTY@beaumont.edu</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT: rgb(204,204,204) 1px solid; MARGIN: 0pt 0pt 0pt 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Thanks, Youngbin<br><br>anil<br><br><br><br><br>>>> Youngbin Kwak <<a href="mailto:youngbin@umich.edu" target="_blank">youngbin@umich.edu</a>> 5/25/2010 3:20 PM >>><br>
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<div>Hi Anil,<br><br>I'm a newby just like you and am feeling quite lost...<br>I'll let you know if we figure out somewhat standard regime for us..<br><br>Youngbin<br><br>On Tue, May 25, 2010 at 3:16 PM, Anil Shetty <<a href="mailto:ASHETTY@beaumont.edu" target="_blank">ASHETTY@beaumont.edu</a>> wrote:<br>
<br>> HI Youngbin<br>><br>> I am the newest one to use the program DTI-Studio. I am having lots of<br>> problems understanding structure of program steps. Do you have any manual or<br>> step by step recipe for doing tractography using Studio. I would greatly<br>
> appreciate your help.<br>><br>> anil shetty<br>><br>><br>><br>><br>><br>> Anil N. Shetty, Ph.D.<br>> Chief, MR Physics<br>> Diagnostic Radiology<br>> William Beaumont Hospital<br>> Clinical Professor, Diagnostic Radiology, Oakland University<br>
> William Beaumont School of Medicine.<br>> 3601 West 13 Mile Road<br>> Royal Oak, MI 48073<br>><br>> Voice: 248-551-1006<br>> Fax: 248-551-3521<br>> Page: 248-995-3357<br>> e-mail: <a href="mailto:ashetty@beaumont.edu" target="_blank">ashetty@beaumont.edu</a><br>
><br>><br>> >>> Youngbin Kwak <<a href="mailto:youngbin@umich.edu" target="_blank">youngbin@umich.edu</a>> 5/25/2010 2:42 PM >>><br>> Hello all,<br>><br>> I'm trying to create an ROI for performing tractography. What I'm planning<br>
> on is to create an ROI that is defined in a normalized template and then<br>> convert it to native space. In order to do this, I'd first like to<br>> coregister a high-resolution anatomical image to the b0 image, so that<br>
> however I create ROI on the anatomy file would parallel the location of DTI<br>> images.<br>><br>> In order to do this, I've loaded the anatomical image and selected<br>> mutual-Info image registration option. I chose b0 image as reference and<br>
> the<br>> anatomical image as image to be registered and used rigid body<br>> transformation. However there was an error message saying "RegImgFile.tmp<br>> was not found". Can someone help me out resolve this issue?<br>
><br>> Another question I have is, when I perform AIR registration for all the dwi<br>> images, there are new files created labled AIR_filename.<br>> Does the program know that it should use the newly created files (i.e.<br>
> AIR_filename) to perform tensor calculation and the rest of the step?<br>> Or should I get rid of the original guys from the image tab and only have<br>> the new files available before performing tensor calculation?<br>
><br>> thanks a bunch!<br>><br>> Youngbin<br>><br>> --<br>> Youngbin Kwak M.S.<br>> Ph.D. candidate, Neuroscience Graduate Program<br>> Cognitive Science & Cognitive Neuroscience Program<br>
> University of Michigan<br>><br>><br>> _______________________________________________<br>> Mristudio-users mailing list<br>> <a href="mailto:Mristudio-users@mristudio.org" target="_blank">Mristudio-users@mristudio.org</a><br>
> <a href="http://lists.mristudio.org/mailman/listinfo/" target="_blank">http://lists.mristudio.org/mailman/listinfo/</a><br>> Unsubscribe, send a blank email to:<br>> <a href="mailto:Mristudio-users-unsubscribe@mristudio.org" target="_blank">Mristudio-users-unsubscribe@mristudio.org</a><br>
><br><br><br><br>--<br>Youngbin Kwak M.S.<br>Ph.D. candidate, Neuroscience Graduate Program<br>Cognitive Science & Cognitive Neuroscience Program<br>University of Michigan<br><br><br>_______________________________________________<br>
Mristudio-users mailing list<br><a href="mailto:Mristudio-users@mristudio.org" target="_blank">Mristudio-users@mristudio.org</a><br><a href="http://lists.mristudio.org/mailman/listinfo/" target="_blank">http://lists.mristudio.org/mailman/listinfo/</a><br>
Unsubscribe, send a blank email to: <a href="mailto:Mristudio-users-unsubscribe@mristudio.org" target="_blank">Mristudio-users-unsubscribe@mristudio.org</a><br></div></div></blockquote></div><br></div></div><br>_______________________________________________<br>
Mristudio-users mailing list<br><a href="mailto:Mristudio-users@mristudio.org">Mristudio-users@mristudio.org</a><br><a href="http://lists.mristudio.org/mailman/listinfo/" target="_blank">http://lists.mristudio.org/mailman/listinfo/</a><br>
Unsubscribe, send a blank email to: <a href="mailto:Mristudio-users-unsubscribe@mristudio.org">Mristudio-users-unsubscribe@mristudio.org</a><br><br></blockquote></div><br><br clear="all"><br>-- <br>Youngbin Kwak M.S.<br>Ph.D. candidate, Neuroscience Graduate Program<br>
Cognitive Science & Cognitive Neuroscience Program<br>University of Michigan<br>