<div>Hi Anil,</div>
<div> </div>
<div>I'm a newby just like you and am feeling quite lost...</div>
<div>I'll let you know if we figure out somewhat standard regime for us..</div>
<div> </div>
<div>Youngbin<br><br></div>
<div class="gmail_quote">On Tue, May 25, 2010 at 3:16 PM, Anil Shetty <span dir="ltr"><<a href="mailto:ASHETTY@beaumont.edu">ASHETTY@beaumont.edu</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote"> HI Youngbin<br><br>I am the newest one to use the program DTI-Studio. I am having lots of problems understanding structure of program steps. Do you have any manual or step by step recipe for doing tractography using Studio. I would greatly appreciate your help.<br>
<br>anil shetty<br><br><br><br><br><br>Anil N. Shetty, Ph.D.<br>Chief, MR Physics<br>Diagnostic Radiology<br>William Beaumont Hospital<br>Clinical Professor, Diagnostic Radiology, Oakland University<br>William Beaumont School of Medicine.<br>
3601 West 13 Mile Road<br>Royal Oak, MI 48073<br><br>Voice: 248-551-1006<br>Fax: 248-551-3521<br>Page: 248-995-3357<br>e-mail: <a href="mailto:ashetty@beaumont.edu">ashetty@beaumont.edu</a><br><br><br>>>> Youngbin Kwak <<a href="mailto:youngbin@umich.edu">youngbin@umich.edu</a>> 5/25/2010 2:42 PM >>><br>
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<div class="h5">Hello all,<br><br>I'm trying to create an ROI for performing tractography. What I'm planning<br>on is to create an ROI that is defined in a normalized template and then<br>convert it to native space. In order to do this, I'd first like to<br>
coregister a high-resolution anatomical image to the b0 image, so that<br>however I create ROI on the anatomy file would parallel the location of DTI<br>images.<br><br>In order to do this, I've loaded the anatomical image and selected<br>
mutual-Info image registration option. I chose b0 image as reference and the<br>anatomical image as image to be registered and used rigid body<br>transformation. However there was an error message saying "RegImgFile.tmp<br>
was not found". Can someone help me out resolve this issue?<br><br>Another question I have is, when I perform AIR registration for all the dwi<br>images, there are new files created labled AIR_filename.<br>Does the program know that it should use the newly created files (i.e.<br>
AIR_filename) to perform tensor calculation and the rest of the step?<br>Or should I get rid of the original guys from the image tab and only have<br>the new files available before performing tensor calculation?<br><br>thanks a bunch!<br>
<br>Youngbin<br><br>--<br>Youngbin Kwak M.S.<br>Ph.D. candidate, Neuroscience Graduate Program<br>Cognitive Science & Cognitive Neuroscience Program<br>University of Michigan<br><br><br></div></div>_______________________________________________<br>
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Unsubscribe, send a blank email to: <a href="mailto:Mristudio-users-unsubscribe@mristudio.org">Mristudio-users-unsubscribe@mristudio.org</a><br></blockquote></div><br><br clear="all"><br>-- <br>Youngbin Kwak M.S.<br>Ph.D. candidate, Neuroscience Graduate Program<br>
Cognitive Science & Cognitive Neuroscience Program<br>University of Michigan<br>