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<DIV dir=ltr><FONT face=Arial color=#000000 size=2>Hi everyone,</FONT></DIV>
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<DIV dir=ltr><FONT face=Arial size=2>I want to start using MRI DTI track software. I don't know how to make gradient table. Can any one explains the every minute details to make the table and use it to track neuron activities in DTI mouse brain images. Thanks in advance.</FONT></DIV>
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<DIV id=idSignature41174 dir=ltr><PRE>Surya </PRE><PRE>Phone: 614-247-4559
E-mail: Surya.Gnyawali@osumc.edu
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<FONT face=Tahoma size=2><B>From:</B> mristudio-users-bounces@mristudio.org on behalf of Jeff Sadino<BR><B>Sent:</B> Mon 4/5/2010 10:18 PM<BR><B>To:</B> mristudio-users@mristudio.org<BR><B>Subject:</B> [Mristudio-users] command file<BR></FONT><BR></DIV>
<DIV>Hello Everyone,<BR>I am interested in using the command/script based files to run a lot of datasets. I read Xin's posting about doing this in DiffeoMap with the following commands. Is there anywhere I can look to see all of the available commands? And are the instructions the same for DTI Studio as they are for DiffeoMap?<BR><BR>Thank you!<BR>Jeff Sadino<BR><BR><BR>Govind,<BR><BR>You need to create a command txt file named as "<A href="http://xx.cf/">xx.cf</A>" first. The attached is an example. It decribes the syntax of the commands. The Load Command File option process all the loaded subject images based on these commands.<BR><BR>Hope this will help you.<BR><BR>Xin<BR><BR><BR>//.cf file Format<BR><BR>// Lines that begin with "//" are comment lines.<BR>// Commands are enclosed by "Begin/End" clauses.<BR><BR>// The commands use reserved keywords, such as "crop", "format", "orientation".<BR><BR>// Crop Slices in Axial Projection Command Syntax<BR>// crop startslicenumber endslicenumber<BR><BR>// Change Format Command Syntax<BR>// format byte(word, float)<BR><BR>// Change Slice Orientation Command Syntax<BR>// orientation axial(sagittal, coronal)<BR><BR>// Rotate Image Command Syntax<BR>// rotate x degree y degree z degree trilinear(neighbor)<BR><BR>// Shift Image Command Syntax<BR>// shift point(mm) x shift y shift z shift<BR><BR>// Resample Image Command Syntax<BR>// resample imagewidth imageheight numberofslices fovwidth fovheight slicethickness trilinear(neighbor)<BR><BR>// example<BR><BR>// Begin<BR>// crop 20 180<BR>// format byte<BR>// orientation axial<BR>// rotate x 45 y 0 z 10 neighbor<BR>// shift point x 10 y 0 z 5<BR>// resample 181 217 181 181 217 1 trilinear<BR>// End <BR></DIV></BODY></HTML>