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Hi, SC<BR>
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I was trying to write a manual for the program. Once, I wrote it up, I'll give to Xin and she can put it online.<BR>
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Thank for your interests!<BR>
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Date: Fri, 15 May 2009 16:16:39 -0400<BR>From: choisj70@gmail.com<BR>Subject: Re: [Mristudio-users] save and read fiber in Amira format<BR>To: mristudio-users@mristudio.org<BR><BR>I could not find the 3D viewer for Amira format in the MRI <A href="http://studio.org/">studio.org</A>.<BR>Is there anyone who already received reply from Kegang with the 3D viewer?<BR>I am waiting for reply from Kegang Hua.<BR><BR>-SC<BR><BR>
<DIV class=EC_gmail_quote>On Tue, May 12, 2009 at 5:10 PM, susumu <SPAN dir=ltr><<A href="mailto:susumu@mri.jhu.edu">susumu@mri.jhu.edu</A>></SPAN> wrote:<BR>
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<FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial">You can try our 3D viewer. It has only limited functions but it works.</SPAN></FONT><BR>
<FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial"> </SPAN></FONT><BR>
<FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial">You can get it from Kegang Hua.</SPAN></FONT><BR>
<FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial"> </SPAN></FONT><BR>
<FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial">Xin, is it possible to post this handy 3D visualization software in the MriStudio.org website?</SPAN></FONT><BR>
<FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial"> </SPAN></FONT><BR>
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<B><FONT face=Tahoma size=2><SPAN style="FONT-WEIGHT: bold; FONT-SIZE: 10pt; FONT-FAMILY: Tahoma">From:</SPAN></FONT></B><FONT face=Tahoma size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Tahoma"> <A href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</A> [mailto:<A href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</A>] <B><SPAN style="FONT-WEIGHT: bold">On Behalf Of </SPAN></B>[Seongjin]<BR><B><SPAN style="FONT-WEIGHT: bold">Sent:</SPAN></B> Tuesday, May 12, 2009 12:30 PM<BR><B><SPAN style="FONT-WEIGHT: bold">To:</SPAN></B> Yi Jiang; DTI Studio, ROI Editor, Landmarker Questions/Support<BR><B><SPAN style="FONT-WEIGHT: bold">Subject:</SPAN></B> Re: [Mristudio-users] save and read fiber in Amira format</SPAN></FONT><BR></DIV>
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<P style="MARGIN-BOTTOM: 12pt"><FONT face="Times New Roman" size=3><SPAN style="FONT-SIZE: 12pt">Dear users using Amira,<BR><BR>Is there any other way to see Amira format without purchase of Amira SW?<BR>For example, free viewer for Amira formatted file.<BR>Thanks in advance.<BR><BR>-SC<BR><BR></SPAN></FONT></P>
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<FONT face="Times New Roman" size=3><SPAN style="FONT-SIZE: 12pt">On Mon, May 11, 2009 at 4:52 PM, Yi Jiang <<A href="mailto:yj3@duke.edu">yj3@duke.edu</A>> wrote:</SPAN></FONT><BR>
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<FONT face=Arial size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Arial">Hello, dear all,</SPAN></FONT><BR></DIV>
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<FONT face=Arial size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Arial">I tried to select multiple fiber tracts in multiple colors (say, the final selected fibers are from 20 ROIs and in 8 colors). I saved the "selected fibers" in amira format. I tried to load the fiber file in Amira. It was loaded in with no complaint. I then displayed the fibers as lineSetView in Amira. But all the lines displayed with the same color, instead of the 8 colors I would hope.</SPAN></FONT><BR></DIV>
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<FONT face=Arial size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Arial">My questions are: are the fiber color (labels or indices) saved in the amira format? If yes, how can I display them in different colors as in DTIstudio?</SPAN></FONT><BR></DIV>
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<FONT face=Arial size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Arial">Thank you very much!</SPAN></FONT><BR></DIV>
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<FONT face=Arial size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Arial">Best,</SPAN></FONT><BR></DIV>
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<FONT face=Arial size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Arial">Yi</SPAN></FONT><BR></DIV>
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