I could not find the 3D viewer for Amira format in the MRI <a href="http://studio.org">studio.org</a>.<br>Is there anyone who already received reply from Kegang with the 3D viewer?<br>I am waiting for reply from Kegang Hua.<br>
<br>-SC<br><br><div class="gmail_quote">On Tue, May 12, 2009 at 5:10 PM, susumu <span dir="ltr"><<a href="mailto:susumu@mri.jhu.edu">susumu@mri.jhu.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
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<p><font color="navy" face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial; color: navy;">You can try our 3D viewer. It has only limited
functions but it works.</span></font></p>
<p><font color="navy" face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial; color: navy;"> </span></font></p>
<p><font color="navy" face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial; color: navy;">You can get it from Kegang Hua.</span></font></p>
<p><font color="navy" face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial; color: navy;"> </span></font></p>
<p><font color="navy" face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial; color: navy;">Xin, is it possible to post this handy 3D
visualization software in the MriStudio.org website?</span></font></p>
<p><font color="navy" face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial; color: navy;"> </span></font></p>
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<p><b><font face="Tahoma" size="2"><span style="font-size: 10pt; font-family: Tahoma; font-weight: bold;">From:</span></font></b><font face="Tahoma" size="2"><span style="font-size: 10pt; font-family: Tahoma;">
<a href="mailto:mristudio-users-bounces@mristudio.org" target="_blank">mristudio-users-bounces@mristudio.org</a>
[mailto:<a href="mailto:mristudio-users-bounces@mristudio.org" target="_blank">mristudio-users-bounces@mristudio.org</a>] <b><span style="font-weight: bold;">On Behalf Of </span></b>[Seongjin]<br>
<b><span style="font-weight: bold;">Sent:</span></b> Tuesday, May 12, 2009 12:30
PM<br>
<b><span style="font-weight: bold;">To:</span></b> Yi
Jiang; DTI Studio, ROI Editor, Landmarker Questions/Support<br>
<b><span style="font-weight: bold;">Subject:</span></b> Re: [Mristudio-users]
save and read fiber in Amira format</span></font></p>
</div><div><div></div><div class="h5">
<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;"> </span></font></p>
<p style="margin-bottom: 12pt;"><font face="Times New Roman" size="3"><span style="font-size: 12pt;">Dear users using Amira,<br>
<br>
Is there any other way to see Amira format without purchase of Amira SW?<br>
For example, free viewer for Amira formatted file.<br>
Thanks in advance.<br>
<br>
-SC<br>
<br>
</span></font></p>
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<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;">On Mon, May 11, 2009 at 4:52 PM, Yi Jiang
<<a href="mailto:yj3@duke.edu" target="_blank">yj3@duke.edu</a>> wrote:</span></font></p>
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<p><font face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial;">Hello, dear all,</span></font></p>
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<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;"> </span></font></p>
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<p><font face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial;">I tried to select multiple fiber tracts in multiple colors
(say, the final selected fibers are from 20 ROIs and in 8 colors). I saved the
"selected fibers" in amira format. I tried to load the fiber file in
Amira. It was loaded in with no complaint. I then displayed the fibers as
lineSetView in Amira. But all the lines displayed with the same color,
instead of the 8 colors I would hope.</span></font></p>
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<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;"> </span></font></p>
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<p><font face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial;">My questions are: are the fiber color (labels or indices)
saved in the amira format? If yes, how can I display them in different colors
as in DTIstudio?</span></font></p>
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<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;"> </span></font></p>
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<p><font face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial;">Thank you very much!</span></font></p>
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<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;"> </span></font></p>
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<p><font face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial;">Best,</span></font></p>
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<p><font face="Arial" size="2"><span style="font-size: 10pt; font-family: Arial;">Yi</span></font></p>
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<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;"> </span></font></p>
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<p><font face="Times New Roman" size="3"><span style="font-size: 12pt;"> </span></font></p>
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<p style="margin-bottom: 12pt;"><font face="Times New Roman" size="3"><span style="font-size: 12pt;"><br>
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