Xin,<br><br>Thanks for the reply. The problem with your suggestion is the image files are in fact not raw, they're analyze (.img, or .hdr). Any other suggestions?<br><br><br><br><br><br><div class="gmail_quote">On Wed, Mar 25, 2009 at 3:02 PM, <span dir="ltr"><<a href="mailto:mristudio-users-request@mristudio.org">mristudio-users-request@mristudio.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Send Mristudio-users mailing list submissions to<br>
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To subscribe or unsubscribe via the World Wide Web, visit<br>
<a href="http://lists.mristudio.org/mailman/listinfo/mristudio-users" target="_blank">http://lists.mristudio.org/mailman/listinfo/mristudio-users</a><br>
or, via email, send a message with subject or body 'help' to<br>
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When replying, please edit your Subject line so it is more specific<br>
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<br>
Today's Topics:<br>
<br>
1. Re: 15-direction gradient table (<a href="mailto:jenabi@optonline.net">jenabi@optonline.net</a>)<br>
2. Re: 15-direction gradient table (Cruz Navarro, Jovany)<br>
3. About the registration of the rat brain (zhongsuyu123)<br>
4. Problem with Landmarker not loading subjects (Paul Beach)<br>
5. Re: Problem with Landmarker not loading subjects (XIN LI)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Fri, 20 Mar 2009 02:55:28 +0000 (GMT)<br>
From: <a href="mailto:jenabi@optonline.net">jenabi@optonline.net</a><br>
Subject: Re: [Mristudio-users] 15-direction gradient table<br>
To: "DTI Studio, ROI Editor, Landmarker Questions/Support"<br>
<<a href="mailto:mristudio-users@mristudio.org">mristudio-users@mristudio.org</a>><br>
Message-ID: <<a href="mailto:e44fd9ac595b.49c305a0@optonline.net">e44fd9ac595b.49c305a0@optonline.net</a>><br>
Content-Type: text/plain; charset="us-ascii"<br>
<br>
Could you please stop sending me e-mails?<br>
<br>
----- Original Message -----<br>
From: susumu<br>
Date: Thursday, March 19, 2009 9:46 am<br>
Subject: Re: [Mristudio-users] 15-direction gradient table<br>
To: "'DTI Studio, ROI Editor, Landmarker Questions/Support'"<br>
<br>
><br>
><br>
> for which scanner? Or something you can implement in a scanner<br>
> by yourself?<br>
> Anyway, these are some options you can consider;<br>
><br>
><br>
><br>
> Philips "Medium" 15-orientation:<br>
><br>
><br>
><br>
> 0: 0, 0, 0<br>
><br>
> 1: 1.0, 0.0, 0.0<br>
><br>
> 2: 0.0, 1.0, 0.0<br>
><br>
> 3: 0.0, 0.0, 1.0<br>
><br>
> 4: -0.1789, -0.1113, -0.9776<br>
><br>
> 5: -0.0635, 0.3767, -0.9242<br>
><br>
> 6: 0.710, 0.0516, -0.7015<br>
><br>
> 7: 0.6191, -0.4385, -0.6515<br>
><br>
> 8: 0.2424, 0.7843, -0.5710<br>
><br>
> 9: -0.2589, -0.6180, -0.7423<br>
><br>
> 10: -0.8169, 0.1697, -0.5513<br>
><br>
> 11: -0.8438, 0.5261, -0.1060<br>
><br>
> 12: -0.2626, 0.9548, -0.1389<br>
><br>
> 13: 0.0001, 0.9689, 0.2476<br>
><br>
> 14: 0.7453, 0.6663, 0.0242<br>
><br>
> 15: 0.9726, 0.2317, 0.0209<br>
><br>
><br>
><br>
><br>
><br>
> GE 15-orientation<br>
><br>
><br>
><br>
> 0: 0.000, 0.000, 0.000<br>
><br>
> 1: 0.216, -0.8986, 0.38188<br>
><br>
> 2: -0.444, -0.4187, 0.7918<br>
><br>
> 3: -0.6351, -0.7700, -0.05947<br>
><br>
> 4: 0.500, -0.19253, 0.8440<br>
><br>
> 5: -0.2212, 0.5311, -0.8178<br>
><br>
> 6: -0.8919, 0.07914, -0.4451<br>
><br>
> 7: -0.1693, 0.5134, 0.8412<br>
><br>
> 8: -0.2639, -0.4402, -0.8581<br>
><br>
> 9: 0.59852, 0.00692, -0.8010<br>
><br>
> 10: -0.899, 0.2234, 0.3751<br>
><br>
> 11: 0.9853, -0.1664, 0.0385<br>
><br>
> 12: 0.6279, 0.6270, 0.46098<br>
><br>
> 13: -0.3501, 0.9364, 0.02096<br>
><br>
> 14: 0.5270, 0.7731, -0.3528<br>
><br>
> 15: 0.4206, -0.8041, -0.4200<br>
><br>
><br>
><br>
> There are Jones10 and Jones20, but I am not sure if there is<br>
> Jones15.<br>
><br>
><br>
><br>
> _____<br>
><br>
> From: <a href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</a><br>
> [mailto:<a href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</a>] On Behalf Of Abby Ding<br>
> Sent: Thursday, March 19, 2009 6:01 AM<br>
> To: MRIstudio<br>
> Subject: [Mristudio-users] 15-direction gradient table<br>
><br>
><br>
><br>
> Dear users,<br>
><br>
><br>
><br>
> Does any one of you have a 15-direction gradient table to share<br>
> with me?<br>
><br>
><br>
><br>
> Thank you very much for your kindly help!<br>
><br>
><br>
><br>
> Best Regards,<br>
><br>
> Abby<br>
><br>
><br>
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<br>
------------------------------<br>
<br>
Message: 2<br>
Date: Fri, 20 Mar 2009 09:32:19 -0500<br>
From: "Cruz Navarro, Jovany" <<a href="mailto:jnavarro@bcm.tmc.edu">jnavarro@bcm.tmc.edu</a>><br>
Subject: Re: [Mristudio-users] 15-direction gradient table<br>
To: "DTI Studio, ROI Editor, Landmarker Questions/Support"<br>
<<a href="mailto:mristudio-users@mristudio.org">mristudio-users@mristudio.org</a>><br>
Message-ID:<br>
<<a href="mailto:5F4CE8876744A34C8B58096BCD979F6734EF2B@BCMEVS15.ad.bcm.edu">5F4CE8876744A34C8B58096BCD979F6734EF2B@BCMEVS15.ad.bcm.edu</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Could you please stop sending me e-mails?<br>
<br>
________________________________<br>
<br>
From: <a href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</a> on behalf of <a href="mailto:jenabi@optonline.net">jenabi@optonline.net</a><br>
Sent: Thu 3/19/2009 9:55 PM<br>
To: DTI Studio, ROI Editor, Landmarker Questions/Support<br>
Subject: Re: [Mristudio-users] 15-direction gradient table<br>
<br>
<br>
Could you please stop sending me e-mails?<br>
<br>
----- Original Message -----<br>
From: susumu<br>
Date: Thursday, March 19, 2009 9:46 am<br>
Subject: Re: [Mristudio-users] 15-direction gradient table<br>
To: "'DTI Studio, ROI Editor, Landmarker Questions/Support'"<br>
<br>
><br>
><br>
> for which scanner? Or something you can implement in a scanner<br>
> by yourself?<br>
> Anyway, these are some options you can consider;<br>
><br>
><br>
><br>
> Philips "Medium" 15-orientation:<br>
><br>
><br>
><br>
> 0: 0, 0, 0<br>
><br>
> 1: 1.0, 0.0, 0.0<br>
><br>
> 2: 0.0, 1.0, 0.0<br>
><br>
> 3: 0.0, 0.0, 1.0<br>
><br>
> 4: -0.1789, -0.1113, -0.9776<br>
><br>
> 5: -0.0635, 0.3767, -0.9242<br>
><br>
> 6: 0.710, 0.0516, -0.7015<br>
><br>
> 7: 0.6191, -0.4385, -0.6515<br>
><br>
> 8: 0.2424, 0.7843, -0.5710<br>
><br>
> 9: -0.2589, -0.6180, -0.7423<br>
><br>
> 10: -0.8169, 0.1697, -0.5513<br>
><br>
> 11: -0.8438, 0.5261, -0.1060<br>
><br>
> 12: -0.2626, 0.9548, -0.1389<br>
><br>
> 13: 0.0001, 0.9689, 0.2476<br>
><br>
> 14: 0.7453, 0.6663, 0.0242<br>
><br>
> 15: 0.9726, 0.2317, 0.0209<br>
><br>
><br>
><br>
><br>
><br>
> GE 15-orientation<br>
><br>
><br>
><br>
> 0: 0.000, 0.000, 0.000<br>
><br>
> 1: 0.216, -0.8986, 0.38188<br>
><br>
> 2: -0.444, -0.4187, 0.7918<br>
><br>
> 3: -0.6351, -0.7700, -0.05947<br>
><br>
> 4: 0.500, -0.19253, 0.8440<br>
><br>
> 5: -0.2212, 0.5311, -0.8178<br>
><br>
> 6: -0.8919, 0.07914, -0.4451<br>
><br>
> 7: -0.1693, 0.5134, 0.8412<br>
><br>
> 8: -0.2639, -0.4402, -0.8581<br>
><br>
> 9: 0.59852, 0.00692, -0.8010<br>
><br>
> 10: -0.899, 0.2234, 0.3751<br>
><br>
> 11: 0.9853, -0.1664, 0.0385<br>
><br>
> 12: 0.6279, 0.6270, 0.46098<br>
><br>
> 13: -0.3501, 0.9364, 0.02096<br>
><br>
> 14: 0.5270, 0.7731, -0.3528<br>
><br>
> 15: 0.4206, -0.8041, -0.4200<br>
><br>
><br>
><br>
> There are Jones10 and Jones20, but I am not sure if there is<br>
> Jones15.<br>
><br>
><br>
><br>
> _____<br>
><br>
> From: <a href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</a><br>
> [mailto:<a href="mailto:mristudio-users-bounces@mristudio.org">mristudio-users-bounces@mristudio.org</a>] On Behalf Of Abby Ding<br>
> Sent: Thursday, March 19, 2009 6:01 AM<br>
> To: MRIstudio<br>
> Subject: [Mristudio-users] 15-direction gradient table<br>
><br>
><br>
><br>
> Dear users,<br>
><br>
><br>
><br>
> Does any one of you have a 15-direction gradient table to share<br>
> with me?<br>
><br>
><br>
><br>
> Thank you very much for your kindly help!<br>
><br>
><br>
><br>
> Best Regards,<br>
><br>
> Abby<br>
><br>
><br>
-------------- next part --------------<br>
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<br>
------------------------------<br>
<br>
Message: 3<br>
Date: Mon, 23 Mar 2009 12:14:02 +0800 (CST)<br>
From: zhongsuyu123 <<a href="mailto:zhongsuyu123@163.com">zhongsuyu123@163.com</a>><br>
Subject: [Mristudio-users] About the registration of the rat brain<br>
To: <a href="mailto:mristudio-users@mristudio.org">mristudio-users@mristudio.org</a><br>
Message-ID:<br>
<<a href="mailto:27953703.177261237781642887.JavaMail.coremail@bj163app98.163.com">27953703.177261237781642887.JavaMail.coremail@bj163app98.163.com</a>><br>
Content-Type: text/plain; charset="gbk"<br>
<br>
Hi,<br>
I want to kown where I can get the template of the rat brain.In the Landermarker,I can only load the Human's template.Are there any templates for registration of the rat brain? If not, how can I do the registration of the rat brain.<br>
Thank you.<br>
Suyu<br>
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<br>
------------------------------<br>
<br>
Message: 4<br>
Date: Wed, 25 Mar 2009 13:55:51 -0400<br>
From: Paul Beach <<a href="mailto:pabeach1@gmail.com">pabeach1@gmail.com</a>><br>
Subject: [Mristudio-users] Problem with Landmarker not loading<br>
subjects<br>
To: <a href="mailto:Mristudio-users@mristudio.org">Mristudio-users@mristudio.org</a><br>
Message-ID:<br>
<<a href="mailto:8874e3900903251055o49f6detf48792a6ff04fee1@mail.gmail.com">8874e3900903251055o49f6detf48792a6ff04fee1@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hi everyone,<br>
<br>
So every once and a while I'll be on Landmarker and when I'm trying to load<br>
a subject I'll receive an error message saying "please enter a number<br>
between 0 and 4096." The first time this happened I just closed all my<br>
programs and reopened Landmarker and things worked again. Other times (such<br>
as the latest one) I went so far as to restart my computer, which lead to no<br>
effect.<br>
<br>
This is obviously a huge problem as I can't load subjects whatsoever.<br>
<br>
Any ideas?<br>
<br>
Thanks,<br>
<br>
Paul<br>
<br>
p.s. In case this is necessary information, I've been using landmarks to<br>
reorient subject brains and fiber tracts using affine/rigid transformations.<br>
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<br>
------------------------------<br>
<br>
Message: 5<br>
Date: Wed, 25 Mar 2009 15:02:36 -0400<br>
From: XIN LI <<a href="mailto:xli16@jhmi.edu">xli16@jhmi.edu</a>><br>
Subject: Re: [Mristudio-users] Problem with Landmarker not loading<br>
subjects<br>
To: "DTI Studio, ROI Editor, Landmarker Questions/Support"<br>
<<a href="mailto:mristudio-users@mristudio.org">mristudio-users@mristudio.org</a>><br>
Message-ID: <<a href="mailto:f6d18b4ed76.49ca478c@johnshopkins.edu">f6d18b4ed76.49ca478c@johnshopkins.edu</a>><br>
Content-Type: text/plain; charset=us-ascii<br>
<br>
Paul,<br>
<br>
When you loaded the subject, if the subject is a raw image, did you input the corresponding parameters of the subject in the image parameters window? These parameters are Image Width, Image Height, Slice Orientation, Fov Width, Fov Height, Slice Thickness and Image Data Format. You need to make sure the values of these parameters are the right ones for the subject.<br>
<br>
<br>
Xin<br>
<br>
<br>
<br>
<br>
----- Original Message -----<br>
From: Paul Beach <<a href="mailto:pabeach1@gmail.com">pabeach1@gmail.com</a>><br>
Date: Wednesday, March 25, 2009 1:56 pm<br>
Subject: [Mristudio-users] Problem with Landmarker not loading subjects<br>
To: <a href="mailto:Mristudio-users@mristudio.org">Mristudio-users@mristudio.org</a><br>
<br>
<br>
> Hi everyone,<br>
><br>
> So every once and a while I'll be on Landmarker and when I'm trying<br>
> to load<br>
> a subject I'll receive an error message saying "please enter a number<br>
> between 0 and 4096." The first time this happened I just closed all<br>
> my<br>
> programs and reopened Landmarker and things worked again. Other<br>
> times (such<br>
> as the latest one) I went so far as to restart my computer, which<br>
> lead to no<br>
> effect.<br>
><br>
> This is obviously a huge problem as I can't load subjects whatsoever.<br>
><br>
> Any ideas?<br>
><br>
> Thanks,<br>
><br>
> Paul<br>
><br>
> p.s. In case this is necessary information, I've been using landmarks<br>
> to<br>
> reorient subject brains and fiber tracts using affine/rigid transformations.<br>
> _______________________________________________<br>
> Mristudio-users mailing list<br>
> <a href="mailto:Mristudio-users@mristudio.org">Mristudio-users@mristudio.org</a><br>
><br>
<br>
<br>
------------------------------<br>
<br>
_______________________________________________<br>
Mristudio-users mailing list<br>
<a href="mailto:Mristudio-users@mristudio.org">Mristudio-users@mristudio.org</a><br>
<a href="http://lists.mristudio.org/mailman/listinfo/mristudio-users" target="_blank">http://lists.mristudio.org/mailman/listinfo/mristudio-users</a><br>
<br>
<br>
End of Mristudio-users Digest, Vol 14, Issue 19<br>
***********************************************<br>
</blockquote></div><br><br clear="all"><br>-- <br>Paul Beach<br>Michigan State University<br>College of Osteopathic Medicine<br> - Medical Scientist Training Program<br>Neuroscience Program<br>