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<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Hi Xi,<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>We have very basic software for 3D
visualization. Please contact Luke (<a href="mailto:khua1@jhu.edu">khua1@jhu.edu</a>)
if you want to try it.<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>3D visualization usually doesn’t have much
scientific value for daily image evaluation. We use it only for publication and
for that purpose we use a commercial program called Amira.<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
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<hr size=2 width="100%" align=center tabindex=-1>
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<p class=MsoNormal><b><font size=2 face=Tahoma><span style='font-size:10.0pt;
font-family:Tahoma;font-weight:bold'>From:</span></font></b><font size=2
face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'>
mristudio-users-bounces@mristudio.org
[mailto:mristudio-users-bounces@mristudio.org] <b><span style='font-weight:
bold'>On Behalf Of </span></b><st1:State w:st="on"><st1:place w:st="on">jiangxi</st1:place></st1:State><br>
<b><span style='font-weight:bold'>Sent:</span></b> Tuesday, March 10, 2009 5:58
AM<br>
<b><span style='font-weight:bold'>To:</span></b> mristudio-users@mristudio.org<br>
<b><span style='font-weight:bold'>Subject:</span></b> [Mristudio-users]
reconstruct WM surface</span></font><o:p></o:p></p>
</div>
<p class=MsoNormal><font size=3 face=SimSun><span style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color="#1f497d" face=Verdana><span
style='font-size:10.0pt;font-family:Verdana;color:#1F497D'>Hi,susumu<br>
</span></font><font size=2 face=Verdana><span style='font-size:10.0pt;
font-family:Verdana'> <br>
<font color="#1f497d"><span style='color:#1F497D'> I wonder
if I've got an ideal segmentation of WM based on DTI data, how can I use
it to reconstruct the WM surface? Many thanks!</span></font><br>
<br>
<st1:place w:st="on">Xi Jiang</st1:place><br>
<br>
<br>
<br>
<o:p></o:p></span></font></p>
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face=Verdana><span style='font-size:10.0pt;font-family:Verdana'>
<hr size=2 width="100%" align=center id=stopSpelling>
</span></font></div>
<p class=MsoNormal style='margin-bottom:12.0pt'><font size=2 face=Verdana><span
style='font-size:10.0pt;font-family:Verdana'>Date: Mon, 9 Mar 2009 10:08:44
-0400<br>
From: susumu@mri.jhu.edu<br>
To: mristudio-users@mristudio.org<br>
Subject: Re: [Mristudio-users] read 4D DWI Philips Achieva 3T DICOM files<o:p></o:p></span></font></p>
<div>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>This must be the new "extended
DICOM" format.</span></font><font size=2 face=Verdana><span
style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>I wonder if it is possible to send our
your original DICOM and converted NIFTI and Analyze so that we can find out why
you are having the I/O error.</span></font><font size=2 face=Verdana><span
style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'> </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
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<hr size=2 width="100%" align=center>
</span></font></div>
<p class=MsoNormal><b><font size=2 face=Tahoma><span style='font-size:10.0pt;
font-family:Tahoma;font-weight:bold'>From:</span></font></b><font size=2
face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'>
mristudio-users-bounces@mristudio.org
[mailto:mristudio-users-bounces@mristudio.org] <b><span style='font-weight:
bold'>On Behalf Of </span></b>???<br>
<b><span style='font-weight:bold'>Sent:</span></b> Sunday, March 08, 2009 7:14
AM<br>
<b><span style='font-weight:bold'>To:</span></b> mristudio-users@mristudio.org<br>
<b><span style='font-weight:bold'>Subject:</span></b> [Mristudio-users] read 4D
DWI Philips Achieva 3T DICOM files</span></font><font size=2 face=Verdana><span
style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'> </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'>Hi:<br>
<br>
I have DWI DICOM files from a Philips Achieva 3T scanner. They are
4D DICOM file with all the slices and directions in one file, e.g.
'IM_001' without any extensions. </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'>It could be converted to NIFTI or ANALYZE
format with dcm2niigui.exe. However, DTIStudio was failed
to open my data with neither NIFTI nor Analyze format. </span></font><font
size=2 face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'>How can I read with DTIStudio, or convert
it to 3D DICOM files ?<br>
<br>
The same question has been posted before, here it is: <a
href="http://lists.mristudio.org/pipermail/mristudio-users/2008/000229.html">http://lists.mristudio.org/pipermail/mristudio-users/2008/000229.html</a>.
Is it solved now?</span></font><font size=2 face=Verdana><span
style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'> </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'>Sincerely,</span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'> </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'> </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'> Hu Y.Z.</span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt;font-family:"Times New Roman"'> </span></font><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><o:p></o:p></span></font></p>
</div>
<div>
<p class=MsoNormal><st1:PlaceName w:st="on"><font size=3 face="Times New Roman"><span
style='font-size:12.0pt;font-family:"Times New Roman"'>Zhejiang</span></font></st1:PlaceName><font
size=2 face=Verdana><span style='font-size:10.0pt;font-family:Verdana'> <st1:PlaceType
w:st="on">University</st1:PlaceType>, <st1:place w:st="on"><st1:City w:st="on">Hangzhou</st1:City>,
<st1:country-region w:st="on">China</st1:country-region></st1:place>.<o:p></o:p></span></font></p>
</div>
</div>
<p class=MsoNormal><font size=2 face=Verdana><span style='font-size:10.0pt;
font-family:Verdana'><o:p> </o:p></span></font></p>
<div class=MsoNormal align=center style='text-align:center'><font size=2
face=Verdana><span style='font-size:10.0pt;font-family:Verdana'>
<hr size=2 width="100%" align=center>
</span></font></div>
<p class=MsoNormal><font size=2 face=SimSun><span lang=ZH-CN style='font-size:
10.0pt'>把</span></font><font size=2 face=Verdana><span style='font-size:10.0pt;
font-family:Verdana'>MSN</span></font><font size=2><span lang=ZH-CN
style='font-size:10.0pt'>装进手机，更多聊天乐趣等你挖掘！</span></font><font size=2
face=Verdana><span lang=ZH-CN style='font-size:10.0pt;font-family:Verdana'> </span></font><font
size=2 face=Verdana><span style='font-size:10.0pt;font-family:Verdana'><a
href="http://mobile.msn.com.cn/" target="_new"><font face=SimSun><span
lang=ZH-CN style='font-family:SimSun'>立刻下载！</span></font></a><o:p></o:p></span></font></p>
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