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I understand, many thanks Susumu! Have a great weekend, ping<BR><BR>
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Date: Sun, 25 Jan 2009 08:38:18 -0500<BR>From: susumu@mri.jhu.edu<BR>To: mristudio-users@mristudio.org<BR>Subject: Re: [Mristudio-users] human brain atlas<BR><BR>
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<P class=EC_MsoNormal><FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial">Hi Ping,</SPAN></FONT></P>
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<P class=EC_MsoNormal><FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial">We have several white matter atlases in lbam.med.jhmi.edu, but the easiest way is to download Landmarker/RoiEditor from <A href="http://www.mristudio.org/">www.mristudio.org</A>, which come with different types of electronic atlases. One of them is population-averaged atlas in the MNI coordinates. If you use linear normalization, I recommend using this atlas (named ICBM_DTI-81 for GE/Siemens and JHU-MNI-GA for Philips). If you use highly non-linear normalization, I recommend the single-subject atlas (named JHU-MNI-SS). Both atlases come with a hand-segmented white matter parcellation map (WMPM). If you download RoiEditor, this software can apply the WMPM for various types of image quantification. Please refer to <A href="http://www.mristudio.org/">www.mristudio.org</A> for more info.</SPAN></FONT></P>
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<P class=EC_MsoNormal><FONT face=Arial color=navy size=2><SPAN style="FONT-SIZE: 10pt; COLOR: navy; FONT-FAMILY: Arial">Susumu</SPAN></FONT></P>
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<P class=EC_MsoNormal><B><FONT face=Tahoma size=2><SPAN style="FONT-WEIGHT: bold; FONT-SIZE: 10pt; FONT-FAMILY: Tahoma">From:</SPAN></FONT></B><FONT face=Tahoma size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Tahoma"> mristudio-users-bounces@mristudio.org [mailto:mristudio-users-bounces@mristudio.org] <B><SPAN style="FONT-WEIGHT: bold">On Behalf Of </SPAN></B>WangPing<BR><B><SPAN style="FONT-WEIGHT: bold">Sent:</SPAN></B> Saturday, January 24, 2009 11:53 PM<BR><B><SPAN style="FONT-WEIGHT: bold">To:</SPAN></B> mristudio-users@mristudio.org<BR><B><SPAN style="FONT-WEIGHT: bold">Subject:</SPAN></B> [Mristudio-users] human brain atlas<BR><B><SPAN style="FONT-WEIGHT: bold">Importance:</SPAN></B> High</SPAN></FONT></P></DIV>
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<P class=EC_MsoNormal style="MARGIN-BOTTOM: 12pt"><FONT face=Verdana size=2><SPAN style="FONT-SIZE: 10pt; FONT-FAMILY: Verdana">Dear Dr. Mori and the List:<BR> <BR>Could anyone recommend a brain atlas (label atlas) that covers the main white matters? It will be great if this atlas is easy to register to MNI template.<BR> <BR>Thanks a lot!<BR>Ping<BR><BR><BR></SPAN></FONT></P>
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