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<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'>Hmmm, that's an interesting error message.
Xin, is it something we expect when AIR.exe is not right?<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span style='font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
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<p class=MsoNormal><b><font size=2 face=Tahoma><span style='font-size:10.0pt;
font-family:Tahoma;font-weight:bold'>From:</span></font></b><font size=2
face=Tahoma><span style='font-size:10.0pt;font-family:Tahoma'>
mristudio-users-bounces@mristudio.org
[mailto:mristudio-users-bounces@mristudio.org] <b><span style='font-weight:
bold'>On Behalf Of </span></b>Christian Bieck<br>
<b><span style='font-weight:bold'>Sent:</span></b> Tuesday, August 05, 2008
3:00 PM<br>
<b><span style='font-weight:bold'>To:</span></b> XIN LI; <st1:PersonName w:st="on">mristudio-users@mristudio.org</st1:PersonName><br>
<b><span style='font-weight:bold'>Subject:</span></b> Re: [Mristudio-users]
Landmarker Image File Create Eroor</span></font><o:p></o:p></p>
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<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
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<p class=MsoNormal style='margin-bottom:12.0pt'><font size=2 face=Arial><span
style='font-size:10.0pt;font-family:Arial'>Hello,</span></font><br>
<br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>As far
as DTI Studio went, I did a regular DTI Mapping as described in the User's
Manual with the Siemens Mosaic files I have, calculating all relevant images
(Color Map, Eigenvector, Mean DWIs, B0, etc.) and then saving them as seperate
Raw Data files.</span></font><br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>Then,
prior to starting Landmarker, I compiled the .exe files as instructed and put
them into the Landmarker folder, whose path is C:UsersCBieckDTI_StudioLandmarker
.</span></font><br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>Then,
starting Landmarker, I opened the JHU_Talairach_SS_DWI to use as template and
then opened my DWI file (96x96x60, Field of View 192x192, Slice thickness 2,
Pixel size 2,0x2,0) and all other files I wanted to normalize, finally loading
the .d file in the form of a Raw Data file that contained the six tensor images
Dxx, Dyy, Dzz, Dxy, Dxz, Dyz. It did not have a .d file extension, however. The
loading itself worked without any problems so far, though.</span></font><br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>Making
sure that the correct DWI template image was loaded, I then clicked the
"Automatic Image Registration Linear" button when the error message
"Image File Create Error" popped up.</span></font><br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>Now I
get this error message for all DWI template images JHU_MNI_GA, JHU_MNI_SS,
JHU_Talairach_SS and ICBM_DTI_81 and both with my own .exe files and those that
Dr. Evangelou kindly sent to me, so I'm somewhat perplexed at it all. Could it
be that Windows Vista has something to do with it? DTI Studio worked very fine
so far on Vista, but maybe <st1:place w:st="on">Vista</st1:place> has a problem
with Landmarker?</span></font><br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>Anyways,
I hope I could provide enough information. If not, I'd be happy to elaborate a
bit further as I'm looking very much forward to get this problem solved. </span></font><br>
<br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>Thank
you for your time,</span></font><br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>Christian
Bieck</span></font><br>
<br>
<br>
<br>
<br>
<br>
<br>
<font face="Courier New"><span style='font-family:"Courier New"'>> Dr.
Bieck, </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> When AIR
alignlinear function is applied, two temporary images are generated in the
Landmarker folder. The message you got means that these two images cannot be
generated. Actually this error rarely happens. </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> Could you
please give me more details about how you did? What's the path of the
Landmarker folder on your machine? What's the operating system you use? Could
you please give me a few screenshots to decribe your problem?</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> Thanks!</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> Xin</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> -----
Original Message -----</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> From:
Christian Bieck <c.bieck@T-Online.de></span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> Date:
Monday, August 4, 2008 2:37 pm</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> Subject:
[Mristudio-users] Landmarker Image File Create Eroor</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> To: <st1:PersonName
w:st="on">mristudio-users@mristudio.org</st1:PersonName></span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
Hello,</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
I'm trying to normalize the files (DWI, B0s, Color Map etc.) I made </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> > via
DTI Studio by using the AIR "Linear" option in Landmarker. </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
However, when I press the button, I get a message saying "Image File </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
Create Error" even though the correct Atlas sample images were opened. </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> > I
got this error message both with using my own compiled .exe files </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> > and
the .exe files Dr Evangelou was so kind to send me, so I'm </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
somewhat at a loss as to what went wrong.</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
I'd very much appreciate it if you could shed some light on what </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
might be the possible sources of the Image File Create Error and how I </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
could fix it.</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
Thank you in advance,</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
Christian Bieck </span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
_______________________________________________</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
Mristudio-users mailing list</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
Mristudio-users@mristudio.org</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> >
</span></font><br>
<font face="Courier New"><span style='font-family:"Courier New"'>> </span></font><o:p></o:p></p>
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