[Mristudio-users] difference between JHU_MNI_SS_FA and JHU_MNI_SS_FA_ss
Xin Li
xli16 at jhmi.edu
Wed Jul 21 10:58:27 EDT 2010
I am going to forward your email to my colleague. He will check for you.
Xin
----- Original Message -----
From: "Risen, Sarah" <risen at kennedykrieger.org>
Date: Wednesday, July 21, 2010 10:48 am
Subject: Re: [Mristudio-users] difference between JHU_MNI_SS_FA and JHU_MNI_SS_FA_ss
To: "DTI Studio, ROI Editor, DiffeoMap Questions/Support" <mristudio-users at mristudio.org>
> We did get the pop-up message...
>
> -----Original Message-----
> From: mristudio-users-bounces at mristudio.org [ On Behalf Of Xin Li
> Sent: Wednesday, July 21, 2010 10:13 AM
> To: DTI Studio, ROI Editor, DiffeoMap Questions/Support
> Subject: Re: [Mristudio-users] difference between JHU_MNI_SS_FA and JHU_MNI_SS_FA_ss
>
> After you clicked the "OK" button of DiffeoMap, did you get this
> popped up message "The image data have been sent to the ftp server successfully."?
>
>
> Xin
>
> ----- Original Message -----
> From: "Risen, Sarah" <risen at kennedykrieger.org>
> Date: Wednesday, July 21, 2010 10:09 am
> Subject: Re: [Mristudio-users] difference between JHU_MNI_SS_FA and JHU_MNI_SS_FA_ss
> To: "DTI Studio, ROI Editor, DiffeoMap Questions/Support" <mristudio-users at mristudio.org>
>
>
> > No, So I am guessing that it did not go through?
> >
> > -----Original Message-----
> > From: mristudio-users-bounces at mristudio.org [ On Behalf Of Xin Li
> > Sent: Wednesday, July 21, 2010 10:07 AM
> > To: DTI Studio, ROI Editor, DiffeoMap Questions/Support
> > Subject: Re: [Mristudio-users] difference between JHU_MNI_SS_FA
> and JHU_MNI_SS_FA_ss
> >
> > Hello Sarah,
> >
> > After you sent the data, did you receive an email that told you
> the
> > lddmm job is processing?
> >
> >
> > Xin
> >
> >
> >
> > ----- Original Message -----
> > From: "Risen, Sarah" <risen at kennedykrieger.org>
> > Date: Wednesday, July 21, 2010 10:03 am
> > Subject: Re: [Mristudio-users] difference
> between JHU_MNI_SS_FA and JHU_MNI_SS_FA_ss
> > To: "DTI Studio, ROI Editor, DiffeoMap Questions/Support" <mristudio-users at mristudio.org>
> >
> >
> > > Yesterday at 3 pm we did the initial multichannel LDDMM and
> typed
> > my
> > > email. In the tutorial, they said results are emailed in 30 min
> -
> > 5
> > > hours. Is this an accurate time frame? Is there a contact if
> we
> > have
> > > not received a reply email in >15 hours? Thank you. sarah
> > >
> > > From: mristudio-users-bounces at mristudio.org [ On Behalf Of
> susumu
> > mori
> > > Sent: Wednesday, July 21, 2010 8:34 AM
> > > To: DTI Studio, ROI Editor, DiffeoMap Questions/Support
> > > Subject: Re: [Mristudio-users] difference between JHU_MNI_SS_FA
>
> > and JHU_MNI_SS_FA_ss
> > >
> > > "SS" means "single-subject", while "ss" means "skull stripped".
> > >
> > > Sorry for the confusing nomenclature.
> > > If your data is skull stripped, you should use "ss" atlas.
> > > Usually linear transformation works between non-skull stripped
>
> > data.
> > > However, sometimes some extra signal such as sinus interferes
> with
> > the
> > > registration. In this case, you may need to do registration
> between
> >
> > > skull-stripped images.
> > > For LDDMM, it is safe to use skull-stripped images.
> > > On Tue, Jul 20, 2010 at 5:44 PM, Josselin
> <j.houenou at yahoo.fr<>> wrote:
> > > Hi,
> > > In many files provided, some have the letters "_ss" attached to
>
> > them.
> > > What does it mean ? e.g. what's the difference between
> > JHU_MNI_SS_FA
> > > and JHU_MNI_SS_FA_ss ?
> > > thanks,
> > > Josselin
> > >
> > >
> > >
> > >
> > >
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