[Mristudio-users] Importing Siemens slice dicom images to dtistudio

[susumu mori]

Hmmmm, reading the Mosaic into DtiStudio let you see individual images. You
can save them as separate raw or Analyze files. If you want DICOM, I thought
there was a way. Hangyi, I thought there was a DICOM save option?

On Fri, Apr 30, 2010 at 3:23 PM, Naama Barnea-Goraly <naamab at stanford.edu>wrote:

>
> Manzar is right, I would like to see the images individually - like the GE
> output. Susumu's reply makes me think I am missing something. Right now I
> can only look at a whole slice so I can't compare the different repetitions,
> also in the image window I can only see the whole slice in axial view (2D).
> Anyway I can view this scan differently?
>
> Thanks,
>
> Naama
>
>
>
>
>
>
>
> On Apr 30, 2010, at 11:37 AM, susumu mori wrote:
>
> Oh I see. I'm not sure why Naama wants it....
>
> On Fri, Apr 30, 2010 at 2:34 PM, Ashtari, Manzar <ASHTARI at email.chop.edu>wrote:
>
>>   I know what Naama is asking for.  Siemens images come in mosaic form
>> and she wants to have them none mosaic.  I know you can convert them on the
>> scanner but don't know of any program that does it in a lab setting.
>>
>>
>> Best,
>>
>> MA
>>  *
>>
>> *
>> ------------------------------
>> *From:* mristudio-users-bounces at mristudio.org [
>> mristudio-users-bounces at mristudio.org] On Behalf Of susumu mori [
>> susumu at mri.jhu.edu]
>> *Sent:* Friday, April 30, 2010 12:25 PM
>> *To:* DTI Studio, ROI Editor, DiffeoMap Questions/Support; Hangyi Jiang
>> *Subject:* Re: [Mristudio-users] Importing Siemens slice dicom images to
>> dtistudio
>>
>>  Naama,
>>
>> I'm not exactly sure about what you are asking but maybe related to what I
>> experienced in the past?
>>
>> For Siemens, GE, and Philips, I got an impression that you need a research
>> agreement to store DICOM files into separate directories based on imaging
>> type such as T1, T2, DTI. If you run scans and burn a CD for clinical
>> purpose, you find DICOM files all mixed up in 1 or multiple directories with
>> a generic names, from which it is very difficult to sort. These CD usually
>> includes a DICOM viewer and you need to use it for the viewing purpose.
>>
>> So, I would first check if your scanner has an option to save DICOM in
>> separate directories based on the modalities. If not, we wrote a small
>> program to sort out the clinical DICOM files. We don't use this very often
>> and may not work for some type of operating systems, but you can at least
>> give it a try. Please contact Hangyi if you want it.
>>
>> Susumu
>>
>>
>> On Fri, Apr 30, 2010 at 10:46 AM, Ashtari, Manzar <ASHTARI at email.chop.edu
>> > wrote:
>>
>>> Yes you will have a separate series listed along with others.
>>> Best,
>>>
>>> MA
>>> ________________________________________
>>> From: mristudio-users-bounces at mristudio.org [
>>> mristudio-users-bounces at mristudio.org] On Behalf Of Naama Barnea-Goraly
>>> [naamab at stanford.edu]
>>>  Sent: Friday, April 30, 2010 10:16 AM
>>> To: DTI Studio, ROI Editor, DiffeoMap Questions/Support
>>> Subject: Re: [Mristudio-users] Importing Siemens slice dicom images to
>>>  dtistudio
>>>
>>> Thank you - is there a way to separate them off the scanner?
>>>
>>> Thanks,
>>>
>>> Naama
>>>
>>>
>>>
>>> On Apr 30, 2010, at 6:53 AM, Ashtari, Manzar wrote:
>>>
>>> > This is done as an option on the scanner. You can also perform this
>>> > after the images are reconstructed.
>>> > Best,
>>> >
>>> > MA
>>> > ________________________________________
>>> > From: mristudio-users-bounces at mristudio.org [
>>> mristudio-users-bounces at mristudio.org
>>> > ] On Behalf Of Naama Barnea-Goraly [naamab at stanford.edu]
>>> > Sent: Friday, April 30, 2010 9:41 AM
>>> > To: DiffeoMap Questions/Support DTI Studio ROI Editor
>>> > Subject: [Mristudio-users] Importing Siemens slice dicom images to
>>> > dtistudio
>>> >
>>> > The output from the Siemens scanner are slice dicom images. How do I
>>> > separate them into individual images like the ones we get from GE?
>>> >
>>> > Thanks,
>>> >
>>> > Naama
>>> >
>>> >
>>> >
>>> >
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>>> Naama Barnea-Goraly M.D.
>>> Instructor
>>> Center for Interdisciplinary Brain Sciences Research
>>> Stanford University Division of Child and Adolescent Psychiatry
>>> 401 Quarry Rd. MC 5795
>>> Stanford University School of Medicine
>>> Stanford, CA  94305-5795
>>> Phone: (650) 736-1874, fax: (650) 724-4794
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>>
>>
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>
> Naama Barnea-Goraly M.D.
> Instructor
> Center for Interdisciplinary Brain Sciences Research
> Stanford University Division of Child and Adolescent Psychiatry
> 401 Quarry Rd. MC 5795
> Stanford University School of Medicine
> Stanford, CA  94305-5795
> Phone: (650) 736-1874, fax: (650) 724-4794
>
>
> CONFIDENTIALITY NOTICE:  This e-mail communication and any attachments may
> contain confidential information for the use of the designated recipients
> named above.  If you are not the intended recipient, you are hereby notified
> that you have received this communication in error and that any review,
> disclosure, dissemination, distribution or copying of it or its contents is
> prohibited.  If you have received this communication in error, please notify
> Stanford Medical Center immediately by telephone at (650) 725-5722 and
> destroy all copies of this communication and any attachments.  Thank you.
>
>
>
>
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