[Mristudio-users] Mristudio-users Digest, Vol 14, Issue 19
Doyeon Kim
kimdoyeon at gmail.com
Wed Mar 25 15:25:37 EDT 2009
Please remove me from this list.
2009/3/25 Paul Beach <pabeach1 at gmail.com>
> Xin,
>
> Thanks for the reply. The problem with your suggestion is the image files
> are in fact not raw, they're analyze (.img, or .hdr). Any other
> suggestions?
>
>
>
>
>
> On Wed, Mar 25, 2009 at 3:02 PM, <mristudio-users-request at mristudio.org>wrote:
>
>> Send Mristudio-users mailing list submissions to
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>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of Mristudio-users digest..."
>>
>>
>> Today's Topics:
>>
>> 1. Re: 15-direction gradient table (jenabi at optonline.net)
>> 2. Re: 15-direction gradient table (Cruz Navarro, Jovany)
>> 3. About the registration of the rat brain (zhongsuyu123)
>> 4. Problem with Landmarker not loading subjects (Paul Beach)
>> 5. Re: Problem with Landmarker not loading subjects (XIN LI)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Fri, 20 Mar 2009 02:55:28 +0000 (GMT)
>> From: jenabi at optonline.net
>> Subject: Re: [Mristudio-users] 15-direction gradient table
>> To: "DTI Studio, ROI Editor, Landmarker Questions/Support"
>> <mristudio-users at mristudio.org>
>> Message-ID: <e44fd9ac595b.49c305a0 at optonline.net>
>> Content-Type: text/plain; charset="us-ascii"
>>
>> Could you please stop sending me e-mails?
>>
>> ----- Original Message -----
>> From: susumu
>> Date: Thursday, March 19, 2009 9:46 am
>> Subject: Re: [Mristudio-users] 15-direction gradient table
>> To: "'DTI Studio, ROI Editor, Landmarker Questions/Support'"
>>
>> >
>> >
>> > for which scanner? Or something you can implement in a scanner
>> > by yourself?
>> > Anyway, these are some options you can consider;
>> >
>> >
>> >
>> > Philips "Medium" 15-orientation:
>> >
>> >
>> >
>> > 0: 0, 0, 0
>> >
>> > 1: 1.0, 0.0, 0.0
>> >
>> > 2: 0.0, 1.0, 0.0
>> >
>> > 3: 0.0, 0.0, 1.0
>> >
>> > 4: -0.1789, -0.1113, -0.9776
>> >
>> > 5: -0.0635, 0.3767, -0.9242
>> >
>> > 6: 0.710, 0.0516, -0.7015
>> >
>> > 7: 0.6191, -0.4385, -0.6515
>> >
>> > 8: 0.2424, 0.7843, -0.5710
>> >
>> > 9: -0.2589, -0.6180, -0.7423
>> >
>> > 10: -0.8169, 0.1697, -0.5513
>> >
>> > 11: -0.8438, 0.5261, -0.1060
>> >
>> > 12: -0.2626, 0.9548, -0.1389
>> >
>> > 13: 0.0001, 0.9689, 0.2476
>> >
>> > 14: 0.7453, 0.6663, 0.0242
>> >
>> > 15: 0.9726, 0.2317, 0.0209
>> >
>> >
>> >
>> >
>> >
>> > GE 15-orientation
>> >
>> >
>> >
>> > 0: 0.000, 0.000, 0.000
>> >
>> > 1: 0.216, -0.8986, 0.38188
>> >
>> > 2: -0.444, -0.4187, 0.7918
>> >
>> > 3: -0.6351, -0.7700, -0.05947
>> >
>> > 4: 0.500, -0.19253, 0.8440
>> >
>> > 5: -0.2212, 0.5311, -0.8178
>> >
>> > 6: -0.8919, 0.07914, -0.4451
>> >
>> > 7: -0.1693, 0.5134, 0.8412
>> >
>> > 8: -0.2639, -0.4402, -0.8581
>> >
>> > 9: 0.59852, 0.00692, -0.8010
>> >
>> > 10: -0.899, 0.2234, 0.3751
>> >
>> > 11: 0.9853, -0.1664, 0.0385
>> >
>> > 12: 0.6279, 0.6270, 0.46098
>> >
>> > 13: -0.3501, 0.9364, 0.02096
>> >
>> > 14: 0.5270, 0.7731, -0.3528
>> >
>> > 15: 0.4206, -0.8041, -0.4200
>> >
>> >
>> >
>> > There are Jones10 and Jones20, but I am not sure if there is
>> > Jones15.
>> >
>> >
>> >
>> > _____
>> >
>> > From: mristudio-users-bounces at mristudio.org
>> > [mailto:mristudio-users-bounces at mristudio.org] On Behalf Of Abby Ding
>> > Sent: Thursday, March 19, 2009 6:01 AM
>> > To: MRIstudio
>> > Subject: [Mristudio-users] 15-direction gradient table
>> >
>> >
>> >
>> > Dear users,
>> >
>> >
>> >
>> > Does any one of you have a 15-direction gradient table to share
>> > with me?
>> >
>> >
>> >
>> > Thank you very much for your kindly help!
>> >
>> >
>> >
>> > Best Regards,
>> >
>> > Abby
>> >
>> >
>> -------------- next part --------------
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>>
>> ------------------------------
>>
>> Message: 2
>> Date: Fri, 20 Mar 2009 09:32:19 -0500
>> From: "Cruz Navarro, Jovany" <jnavarro at bcm.tmc.edu>
>> Subject: Re: [Mristudio-users] 15-direction gradient table
>> To: "DTI Studio, ROI Editor, Landmarker Questions/Support"
>> <mristudio-users at mristudio.org>
>> Message-ID:
>> <5F4CE8876744A34C8B58096BCD979F6734EF2B at BCMEVS15.ad.bcm.edu>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> Could you please stop sending me e-mails?
>>
>> ________________________________
>>
>> From: mristudio-users-bounces at mristudio.org on behalf of
>> jenabi at optonline.net
>> Sent: Thu 3/19/2009 9:55 PM
>> To: DTI Studio, ROI Editor, Landmarker Questions/Support
>> Subject: Re: [Mristudio-users] 15-direction gradient table
>>
>>
>> Could you please stop sending me e-mails?
>>
>> ----- Original Message -----
>> From: susumu
>> Date: Thursday, March 19, 2009 9:46 am
>> Subject: Re: [Mristudio-users] 15-direction gradient table
>> To: "'DTI Studio, ROI Editor, Landmarker Questions/Support'"
>>
>> >
>> >
>> > for which scanner? Or something you can implement in a scanner
>> > by yourself?
>> > Anyway, these are some options you can consider;
>> >
>> >
>> >
>> > Philips "Medium" 15-orientation:
>> >
>> >
>> >
>> > 0: 0, 0, 0
>> >
>> > 1: 1.0, 0.0, 0.0
>> >
>> > 2: 0.0, 1.0, 0.0
>> >
>> > 3: 0.0, 0.0, 1.0
>> >
>> > 4: -0.1789, -0.1113, -0.9776
>> >
>> > 5: -0.0635, 0.3767, -0.9242
>> >
>> > 6: 0.710, 0.0516, -0.7015
>> >
>> > 7: 0.6191, -0.4385, -0.6515
>> >
>> > 8: 0.2424, 0.7843, -0.5710
>> >
>> > 9: -0.2589, -0.6180, -0.7423
>> >
>> > 10: -0.8169, 0.1697, -0.5513
>> >
>> > 11: -0.8438, 0.5261, -0.1060
>> >
>> > 12: -0.2626, 0.9548, -0.1389
>> >
>> > 13: 0.0001, 0.9689, 0.2476
>> >
>> > 14: 0.7453, 0.6663, 0.0242
>> >
>> > 15: 0.9726, 0.2317, 0.0209
>> >
>> >
>> >
>> >
>> >
>> > GE 15-orientation
>> >
>> >
>> >
>> > 0: 0.000, 0.000, 0.000
>> >
>> > 1: 0.216, -0.8986, 0.38188
>> >
>> > 2: -0.444, -0.4187, 0.7918
>> >
>> > 3: -0.6351, -0.7700, -0.05947
>> >
>> > 4: 0.500, -0.19253, 0.8440
>> >
>> > 5: -0.2212, 0.5311, -0.8178
>> >
>> > 6: -0.8919, 0.07914, -0.4451
>> >
>> > 7: -0.1693, 0.5134, 0.8412
>> >
>> > 8: -0.2639, -0.4402, -0.8581
>> >
>> > 9: 0.59852, 0.00692, -0.8010
>> >
>> > 10: -0.899, 0.2234, 0.3751
>> >
>> > 11: 0.9853, -0.1664, 0.0385
>> >
>> > 12: 0.6279, 0.6270, 0.46098
>> >
>> > 13: -0.3501, 0.9364, 0.02096
>> >
>> > 14: 0.5270, 0.7731, -0.3528
>> >
>> > 15: 0.4206, -0.8041, -0.4200
>> >
>> >
>> >
>> > There are Jones10 and Jones20, but I am not sure if there is
>> > Jones15.
>> >
>> >
>> >
>> > _____
>> >
>> > From: mristudio-users-bounces at mristudio.org
>> > [mailto:mristudio-users-bounces at mristudio.org] On Behalf Of Abby Ding
>> > Sent: Thursday, March 19, 2009 6:01 AM
>> > To: MRIstudio
>> > Subject: [Mristudio-users] 15-direction gradient table
>> >
>> >
>> >
>> > Dear users,
>> >
>> >
>> >
>> > Does any one of you have a 15-direction gradient table to share
>> > with me?
>> >
>> >
>> >
>> > Thank you very much for your kindly help!
>> >
>> >
>> >
>> > Best Regards,
>> >
>> > Abby
>> >
>> >
>> -------------- next part --------------
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>> http://lists.mristudio.org/pipermail/mristudio-users/attachments/20090320/3deba1bf/attachment-0001.html
>>
>> ------------------------------
>>
>> Message: 3
>> Date: Mon, 23 Mar 2009 12:14:02 +0800 (CST)
>> From: zhongsuyu123 <zhongsuyu123 at 163.com>
>> Subject: [Mristudio-users] About the registration of the rat brain
>> To: mristudio-users at mristudio.org
>> Message-ID:
>> <27953703.177261237781642887.JavaMail.coremail at bj163app98.163.com>
>> Content-Type: text/plain; charset="gbk"
>>
>> Hi,
>> I want to kown where I can get the template of the rat brain.In the
>> Landermarker,I can only load the Human's template.Are there any templates
>> for registration of the rat brain? If not, how can I do the registration of
>> the rat brain.
>> Thank you.
>> Suyu
>> -------------- next part --------------
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>>
>> ------------------------------
>>
>> Message: 4
>> Date: Wed, 25 Mar 2009 13:55:51 -0400
>> From: Paul Beach <pabeach1 at gmail.com>
>> Subject: [Mristudio-users] Problem with Landmarker not loading
>> subjects
>> To: Mristudio-users at mristudio.org
>> Message-ID:
>> <8874e3900903251055o49f6detf48792a6ff04fee1 at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> Hi everyone,
>>
>> So every once and a while I'll be on Landmarker and when I'm trying to
>> load
>> a subject I'll receive an error message saying "please enter a number
>> between 0 and 4096." The first time this happened I just closed all my
>> programs and reopened Landmarker and things worked again. Other times
>> (such
>> as the latest one) I went so far as to restart my computer, which lead to
>> no
>> effect.
>>
>> This is obviously a huge problem as I can't load subjects whatsoever.
>>
>> Any ideas?
>>
>> Thanks,
>>
>> Paul
>>
>> p.s. In case this is necessary information, I've been using landmarks to
>> reorient subject brains and fiber tracts using affine/rigid
>> transformations.
>> -------------- next part --------------
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>>
>> ------------------------------
>>
>> Message: 5
>> Date: Wed, 25 Mar 2009 15:02:36 -0400
>> From: XIN LI <xli16 at jhmi.edu>
>> Subject: Re: [Mristudio-users] Problem with Landmarker not loading
>> subjects
>> To: "DTI Studio, ROI Editor, Landmarker Questions/Support"
>> <mristudio-users at mristudio.org>
>> Message-ID: <f6d18b4ed76.49ca478c at johnshopkins.edu>
>> Content-Type: text/plain; charset=us-ascii
>>
>> Paul,
>>
>> When you loaded the subject, if the subject is a raw image, did you input
>> the corresponding parameters of the subject in the image parameters window?
>> These parameters are Image Width, Image Height, Slice Orientation, Fov
>> Width, Fov Height, Slice Thickness and Image Data Format. You need to make
>> sure the values of these parameters are the right ones for the subject.
>>
>>
>> Xin
>>
>>
>>
>>
>> ----- Original Message -----
>> From: Paul Beach <pabeach1 at gmail.com>
>> Date: Wednesday, March 25, 2009 1:56 pm
>> Subject: [Mristudio-users] Problem with Landmarker not loading subjects
>> To: Mristudio-users at mristudio.org
>>
>>
>> > Hi everyone,
>> >
>> > So every once and a while I'll be on Landmarker and when I'm trying
>> > to load
>> > a subject I'll receive an error message saying "please enter a number
>> > between 0 and 4096." The first time this happened I just closed all
>> > my
>> > programs and reopened Landmarker and things worked again. Other
>> > times (such
>> > as the latest one) I went so far as to restart my computer, which
>> > lead to no
>> > effect.
>> >
>> > This is obviously a huge problem as I can't load subjects whatsoever.
>> >
>> > Any ideas?
>> >
>> > Thanks,
>> >
>> > Paul
>> >
>> > p.s. In case this is necessary information, I've been using landmarks
>> > to
>> > reorient subject brains and fiber tracts using affine/rigid
>> transformations.
>> > _______________________________________________
>> > Mristudio-users mailing list
>> > Mristudio-users at mristudio.org
>> >
>>
>>
>> ------------------------------
>>
>> _______________________________________________
>> Mristudio-users mailing list
>> Mristudio-users at mristudio.org
>> http://lists.mristudio.org/mailman/listinfo/mristudio-users
>>
>>
>> End of Mristudio-users Digest, Vol 14, Issue 19
>> ***********************************************
>>
>
>
>
> --
> Paul Beach
> Michigan State University
> College of Osteopathic Medicine
> - Medical Scientist Training Program
> Neuroscience Program
>
> _______________________________________________
> Mristudio-users mailing list
> Mristudio-users at mristudio.org
> http://lists.mristudio.org/mailman/listinfo/mristudio-users
>
>
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